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The map label for this gene is ygdL [H]

Identifier: 66044581

GI number: 66044581

Start: 1512659

End: 1513489

Strand: Direct

Name: ygdL [H]

Synonym: Psyr_1333

Alternate gene names: 66044581

Gene position: 1512659-1513489 (Clockwise)

Preceding gene: 66044573

Following gene: 66044591

Centisome position: 24.82

GC content: 60.65

Gene sequence:

>831_bases
ATGAGCGCAGAAGATCCGCGGTTCGCTGGTATCGCCCGTCTATATGGCATCGAAGGGCTGGCACGCCTGCGCGCGGCCCA
TGTGGCGGTGGTGGGTATCGGCGGGGTGGGCTCCTGGGCGGCGGAAGCCATGGCGCGCAGTGGTGTGGGCGAGATTTCGC
TGTTCGACATGGACGATGTCTGTGTCAGTAACAGCAACCGTCAGTTGCATGCGCTCAGCAGTACGGTTGGCCAGTCGAAA
GTCGAGGTGATGGCTGAGCGTATCCGTGCGATCAACCCCGATTGCATCGTGCACGCGGTGGCTGATTTCGTCACCCGCGA
CACCATGGCCGAGTGCATCACCCCGGACATGGACTTCGTCATCGACTGTATCGACAGCGTCAACGCCAAGGCTGCGCTGA
TTTCCTGGTGCAAACGACGCAAGATTCAGATGGTCACCACCGGCGGGGCGGGCGGGCAGATCGATCCGACCCTGATTCAG
ATCGCCGACCTGAACCGCACCTTCAATGACCCGCTGGCCTCCAAGGTGCGTTCGACCCTGCGTCGGGATTATGGCTTTTC
ACGCACGCCTAACCGTCACTACAGCGTGCCTTGCGTGTTTTCCACTGAACAACTGCGCTACCCCAAGCCGGATGGCAGTA
TTTGTCTGGAAAAGAAATTCGTCGGCGAGGGCGTAAAGCTCGATTGCGCCGGTGGTTTCGGTGCAGTGATGATGGTGACT
GCGACCTTTGGCATGGTTGCCGCTACCCGTGCGGTAGACAAGCTGGTGGCGGGCACGCGACGGCCTTCGGAGCGGATCAA
GCCAGCGCTTGTAACACCCGATCAGGCTTGA

Upstream 100 bases:

>100_bases
CAGTTCGTCAACGGACAAGGACCTTGCCTGCCGGGAACAAGTCAGGTGTCTTGCCGTCGACAAACCCCTATAATGCGCGC
CGGTTTTTGAGGTATTGATC

Downstream 100 bases:

>100_bases
GTCAGCTGGCGCATCTTCTGCAGTACGGCATTCAGGCCGTTGCTGCGCGAGGGTGAGAGCTGGCGGGCGAGGCCCAACTG
ATTGAACCAGTCAGGTAAAT

Product: UBA/THIF-type NAD/FAD binding fold

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MSAEDPRFAGIARLYGIEGLARLRAAHVAVVGIGGVGSWAAEAMARSGVGEISLFDMDDVCVSNSNRQLHALSSTVGQSK
VEVMAERIRAINPDCIVHAVADFVTRDTMAECITPDMDFVIDCIDSVNAKAALISWCKRRKIQMVTTGGAGGQIDPTLIQ
IADLNRTFNDPLASKVRSTLRRDYGFSRTPNRHYSVPCVFSTEQLRYPKPDGSICLEKKFVGEGVKLDCAGGFGAVMMVT
ATFGMVAATRAVDKLVAGTRRPSERIKPALVTPDQA

Sequences:

>Translated_276_residues
MSAEDPRFAGIARLYGIEGLARLRAAHVAVVGIGGVGSWAAEAMARSGVGEISLFDMDDVCVSNSNRQLHALSSTVGQSK
VEVMAERIRAINPDCIVHAVADFVTRDTMAECITPDMDFVIDCIDSVNAKAALISWCKRRKIQMVTTGGAGGQIDPTLIQ
IADLNRTFNDPLASKVRSTLRRDYGFSRTPNRHYSVPCVFSTEQLRYPKPDGSICLEKKFVGEGVKLDCAGGFGAVMMVT
ATFGMVAATRAVDKLVAGTRRPSERIKPALVTPDQA
>Mature_275_residues
SAEDPRFAGIARLYGIEGLARLRAAHVAVVGIGGVGSWAAEAMARSGVGEISLFDMDDVCVSNSNRQLHALSSTVGQSKV
EVMAERIRAINPDCIVHAVADFVTRDTMAECITPDMDFVIDCIDSVNAKAALISWCKRRKIQMVTTGGAGGQIDPTLIQI
ADLNRTFNDPLASKVRSTLRRDYGFSRTPNRHYSVPCVFSTEQLRYPKPDGSICLEKKFVGEGVKLDCAGGFGAVMMVTA
TFGMVAATRAVDKLVAGTRRPSERIKPALVTPDQA

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Escherichia coli, GI1789177, Length=255, Percent_Identity=56.8627450980392, Blast_Score=296, Evalue=8e-82,
Organism=Escherichia coli, GI1787048, Length=136, Percent_Identity=33.8235294117647, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87082356, Length=140, Percent_Identity=29.2857142857143, Blast_Score=72, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6321790, Length=178, Percent_Identity=29.7752808988764, Blast_Score=100, Evalue=4e-22,
Organism=Saccharomyces cerevisiae, GI6322825, Length=174, Percent_Identity=33.3333333333333, Blast_Score=87, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24582879, Length=123, Percent_Identity=31.7073170731707, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24660640, Length=135, Percent_Identity=29.6296296296296, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 29698; Mature: 29566

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS00065 D_2_HYDROXYACID_DH_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAEDPRFAGIARLYGIEGLARLRAAHVAVVGIGGVGSWAAEAMARSGVGEISLFDMDDV
CCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHCCCCCEEEECCCHH
CVSNSNRQLHALSSTVGQSKVEVMAERIRAINPDCIVHAVADFVTRDTMAECITPDMDFV
HHCCCCCEEHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
IDCIDSVNAKAALISWCKRRKIQMVTTGGAGGQIDPTLIQIADLNRTFNDPLASKVRSTL
HHHHHCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHEEEEECCCCCCCCHHHHHHHHHH
RRDYGFSRTPNRHYSVPCVFSTEQLRYPKPDGSICLEKKFVGEGVKLDCAGGFGAVMMVT
HHHCCCCCCCCCCCCCEEEEEHHHCCCCCCCCCEEEEHHHCCCCCEEEECCCCHHHHHHH
ATFGMVAATRAVDKLVAGTRRPSERIKPALVTPDQA
HHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCC
>Mature Secondary Structure 
SAEDPRFAGIARLYGIEGLARLRAAHVAVVGIGGVGSWAAEAMARSGVGEISLFDMDDV
CCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHCCCCCEEEECCCHH
CVSNSNRQLHALSSTVGQSKVEVMAERIRAINPDCIVHAVADFVTRDTMAECITPDMDFV
HHCCCCCEEHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
IDCIDSVNAKAALISWCKRRKIQMVTTGGAGGQIDPTLIQIADLNRTFNDPLASKVRSTL
HHHHHCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHEEEEECCCCCCCCHHHHHHHHHH
RRDYGFSRTPNRHYSVPCVFSTEQLRYPKPDGSICLEKKFVGEGVKLDCAGGFGAVMMVT
HHHCCCCCCCCCCCCCEEEEEHHHCCCCCCCCCEEEEHHHCCCCCEEEECCCCHHHHHHH
ATFGMVAATRAVDKLVAGTRRPSERIKPALVTPDQA
HHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]