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The map label for this gene is ybjK [C]

Identifier: 66044560

GI number: 66044560

Start: 1489883

End: 1490608

Strand: Direct

Name: ybjK [C]

Synonym: Psyr_1312

Alternate gene names: 66044560

Gene position: 1489883-1490608 (Clockwise)

Preceding gene: 66044559

Following gene: 66044561

Centisome position: 24.45

GC content: 59.64

Gene sequence:

>726_bases
GTGACGATTGCCAGAGAAGGGGCCGCCGGAGTAGCCAGCGCGGTGGCCAAAAGTGTCAAGTATCAGGGCCGCAAGGCTGC
GCGTGAGGGCAGTGAGCAACGCAGGCAGGTCATTCTCGATGCCGCCATGCGTATCGTGGTGCGTGACGGCGTACGCGCCG
TTCGCCATCGCGCAGTGGCCGCCGAAGCCAGTGTGCCGCTGTCGGCAACCACCTATTACTTCAAGGACATCGATGATCTG
TTGACCGATGCCTTCGCCCAGTATGTACAGCGTAGCGCTGATTATCTGGCGCGGCTGTGGCAAAACACCGAAGGTATTCT
GCGCGAGATGATGAACCGCAGTTCCGGGAGTCCGACCGACCGTTTTCGTCTGGCGGACGACATTGCGCGTATGGTGATGG
AGCATATCCGTCATCAGTTGCTGACCCGGCGTGACTATCTGATTGCCGAGCAGGCGTTCTACCATGAAGCACTGATCAAC
CCGCGCCTGACGCCATTGGTCATGGCCCATCAGGAAATTTTGCTGCAGGGCAGTTGTCAGTTCTTCCAGGTAATCGGCTC
CCTGCATCCCTATCAGGATGCTCAGGTGTTGACGGGGCTTATCCGGCGCATTGAGTATCAAGGCCTGCTTCACGGGCCGC
AGCGTCAGGCGGACGAAGAAATGCTCTGTATCCTGACCCGGCAGATGCGTCTGGTCCTGGGCACCCCGCAGCCGGTTCGA
GGGTGA

Upstream 100 bases:

>100_bases
CAAGCGTAACCAGTGGAAAAACAGCCGCCTTCAATGGGCGGCTTTTTTTTAAGTGTTTTTCAGATCGACTCATTTCAGAG
CGACTTATAAGGAAGCTGTC

Downstream 100 bases:

>100_bases
CTATACTGCTGCGCGGGTGTCGCGGATCGGCCATTCAGACGGCTTGACGATCCTGCCGGTTTCGATATTTACCAGCGATG
GCGTGTTGTTCCGCGCCGCC

Product: regulatory protein, TetR

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator TetR Family Protein; Regulatory Protein TetR; TetR Family Regulatory Protein

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MTIAREGAAGVASAVAKSVKYQGRKAAREGSEQRRQVILDAAMRIVVRDGVRAVRHRAVAAEASVPLSATTYYFKDIDDL
LTDAFAQYVQRSADYLARLWQNTEGILREMMNRSSGSPTDRFRLADDIARMVMEHIRHQLLTRRDYLIAEQAFYHEALIN
PRLTPLVMAHQEILLQGSCQFFQVIGSLHPYQDAQVLTGLIRRIEYQGLLHGPQRQADEEMLCILTRQMRLVLGTPQPVR
G

Sequences:

>Translated_241_residues
MTIAREGAAGVASAVAKSVKYQGRKAAREGSEQRRQVILDAAMRIVVRDGVRAVRHRAVAAEASVPLSATTYYFKDIDDL
LTDAFAQYVQRSADYLARLWQNTEGILREMMNRSSGSPTDRFRLADDIARMVMEHIRHQLLTRRDYLIAEQAFYHEALIN
PRLTPLVMAHQEILLQGSCQFFQVIGSLHPYQDAQVLTGLIRRIEYQGLLHGPQRQADEEMLCILTRQMRLVLGTPQPVR
G
>Mature_240_residues
TIAREGAAGVASAVAKSVKYQGRKAAREGSEQRRQVILDAAMRIVVRDGVRAVRHRAVAAEASVPLSATTYYFKDIDDLL
TDAFAQYVQRSADYLARLWQNTEGILREMMNRSSGSPTDRFRLADDIARMVMEHIRHQLLTRRDYLIAEQAFYHEALINP
RLTPLVMAHQEILLQGSCQFFQVIGSLHPYQDAQVLTGLIRRIEYQGLLHGPQRQADEEMLCILTRQMRLVLGTPQPVRG

Specific function: Unknown

COG id: COG3226

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27319; Mature: 27188

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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C
>Mature Secondary Structure 
TIAREGAAGVASAVAKSVKYQGRKAAREGSEQRRQVILDAAMRIVVRDGVRAVRHRAVA
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEASVPLSATTYYFKDIDDLLTDAFAQYVQRSADYLARLWQNTEGILREMMNRSSGSPTD
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHH
RFRLADDIARMVMEHIRHQLLTRRDYLIAEQAFYHEALINPRLTPLVMAHQEILLQGSCQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHH
FFQVIGSLHPYQDAQVLTGLIRRIEYQGLLHGPQRQADEEMLCILTRQMRLVLGTPQPVR
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA