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The map label for this gene is deoC [H]

Identifier: 66044094

GI number: 66044094

Start: 950669

End: 951454

Strand: Direct

Name: deoC [H]

Synonym: Psyr_0839

Alternate gene names: 66044094

Gene position: 950669-951454 (Clockwise)

Preceding gene: 66044092

Following gene: 66044097

Centisome position: 15.6

GC content: 61.83

Gene sequence:

>786_bases
ATGAAAGAGATGACAGCAGATGATGAGCGGCTGGCGCGTCAGGTCATCGGGCTGCTTGAGCTGTTTGCCCTCAATACAGA
CGACACTGAGCAGCGCATTGTCGGCATCTGTCGGCGCGCATGCACGCCTGTGGGACCGGTTGCAGCGGTCAGCGTCCAGC
AACGTTTCGTGTGTCTGGCACGCACCACGCTGGATCGCTTACAGGCTCGTCATATCAAGGTCGTCGCCGTGGTCAATTTC
CCTCATGGCAGCAGCAATGTTCAGTCGGTCATCGCCCAGGTACGTGCTGCGCTGATGGCTGGCGCGGATGAAATCGACGT
CGTGTATCCCTTTCGCGCGCTGCTCGGCGGAGACCGGCAGCCCGGCCTGGCGATGATCTCGGCGTGTTCGGCCTTGTGTG
CCGGGCAGGTGATGCTTACAGCGACGCTTGAAACCGGTGACTTGCGTGACTCGCAAATGATCCTCGACGCTTGCCGCGAT
GCGATTGTTTCGGGCGCTGACTTCATCAAGACCAGCACCGGCAAGGCCGCCAGGCATGTCACGCCGCAGGCTGCACGGAT
CATGCTGGAGTCCATTGCCGACGTAGGCGGGCAAGTGGGGCTGAAGGTTGCAGGCGGAATCCGTACGTTCGACGAGGCGC
GTGTTTACATGGCACTGGTCCGCGCGCGATTTGGCCTGCAATGGATCAACGCCGGGCGCTTTCGGCTGGGCGGCTCCAGC
GTGCTGGACGACTTGCTGGCAAGGCTCGGCCTGCTCGAGTCGCATGGTGGTGGCGATGGCTTTTGA

Upstream 100 bases:

>100_bases
TTCCTGTCTTTTTGTAGCCTTCGTCTTTAAGTACGCCGCTCGCACCTGTCAGCCTTGCAGCCGTATATCGTCCGCTCATG
TTTTGCAGAGCGGAAACACT

Downstream 100 bases:

>100_bases
ATGATCGATGGCTTTGCGCCGGACAAAAAAAGACCCGGCAAAGAGCCGGGTCAAAAACCGTGATTAGCCTGATGAGGAGA
TAATCTGAAAGTCCGAACCA

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MKEMTADDERLARQVIGLLELFALNTDDTEQRIVGICRRACTPVGPVAAVSVQQRFVCLARTTLDRLQARHIKVVAVVNF
PHGSSNVQSVIAQVRAALMAGADEIDVVYPFRALLGGDRQPGLAMISACSALCAGQVMLTATLETGDLRDSQMILDACRD
AIVSGADFIKTSTGKAARHVTPQAARIMLESIADVGGQVGLKVAGGIRTFDEARVYMALVRARFGLQWINAGRFRLGGSS
VLDDLLARLGLLESHGGGDGF

Sequences:

>Translated_261_residues
MKEMTADDERLARQVIGLLELFALNTDDTEQRIVGICRRACTPVGPVAAVSVQQRFVCLARTTLDRLQARHIKVVAVVNF
PHGSSNVQSVIAQVRAALMAGADEIDVVYPFRALLGGDRQPGLAMISACSALCAGQVMLTATLETGDLRDSQMILDACRD
AIVSGADFIKTSTGKAARHVTPQAARIMLESIADVGGQVGLKVAGGIRTFDEARVYMALVRARFGLQWINAGRFRLGGSS
VLDDLLARLGLLESHGGGDGF
>Mature_261_residues
MKEMTADDERLARQVIGLLELFALNTDDTEQRIVGICRRACTPVGPVAAVSVQQRFVCLARTTLDRLQARHIKVVAVVNF
PHGSSNVQSVIAQVRAALMAGADEIDVVYPFRALLGGDRQPGLAMISACSALCAGQVMLTATLETGDLRDSQMILDACRD
AIVSGADFIKTSTGKAARHVTPQAARIMLESIADVGGQVGLKVAGGIRTFDEARVYMALVRARFGLQWINAGRFRLGGSS
VLDDLLARLGLLESHGGGDGF

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 2 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=251, Percent_Identity=31.0756972111554, Blast_Score=107, Evalue=1e-23,
Organism=Escherichia coli, GI1790841, Length=227, Percent_Identity=42.7312775330396, Blast_Score=199, Evalue=2e-52,
Organism=Caenorhabditis elegans, GI17533015, Length=258, Percent_Identity=34.4961240310078, Blast_Score=130, Evalue=9e-31,
Organism=Drosophila melanogaster, GI19922098, Length=263, Percent_Identity=31.5589353612167, Blast_Score=109, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 27822; Mature: 27822

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEMTADDERLARQVIGLLELFALNTDDTEQRIVGICRRACTPVGPVAAVSVQQRFVCLA
CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
RTTLDRLQARHIKVVAVVNFPHGSSNVQSVIAQVRAALMAGADEIDVVYPFRALLGGDRQ
HHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHCCCCC
PGLAMISACSALCAGQVMLTATLETGDLRDSQMILDACRDAIVSGADFIKTSTGKAARHV
CHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCHHHCC
TPQAARIMLESIADVGGQVGLKVAGGIRTFDEARVYMALVRARFGLQWINAGRFRLGGSS
CHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCHHHHCCCCEECCCHH
VLDDLLARLGLLESHGGGDGF
HHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKEMTADDERLARQVIGLLELFALNTDDTEQRIVGICRRACTPVGPVAAVSVQQRFVCLA
CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
RTTLDRLQARHIKVVAVVNFPHGSSNVQSVIAQVRAALMAGADEIDVVYPFRALLGGDRQ
HHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHCCCCC
PGLAMISACSALCAGQVMLTATLETGDLRDSQMILDACRDAIVSGADFIKTSTGKAARHV
CHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCHHHCC
TPQAARIMLESIADVGGQVGLKVAGGIRTFDEARVYMALVRARFGLQWINAGRFRLGGSS
CHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCHHHHCCCCEECCCHH
VLDDLLARLGLLESHGGGDGF
HHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA