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The map label for this gene is orn [H]

Identifier: 66043831

GI number: 66043831

Start: 641096

End: 641632

Strand: Direct

Name: orn [H]

Synonym: Psyr_0564

Alternate gene names: 66043831

Gene position: 641096-641632 (Clockwise)

Preceding gene: 66043829

Following gene: 66043832

Centisome position: 10.52

GC content: 58.1

Gene sequence:

>537_bases
ATGCAGAACAAGCAGAACCTGATCTGGATCGATCTGGAAATGACCGGTCTGGACCCTGATACCGATGTCATTATCGAAAT
GGCCACGATCATCACCGATAGCGAGCTGAACACCCTGGCCGAAGGTCCGGTGATCGCTGTGCATCAGAGCGACGAAACGC
TGGCGAAAATGGATGAGTGGAACACTCGCCAGCACGGCGGTTCGGGCCTGACCCAGCGCGTGCGCGAAAGTACCGTCAGC
ATGGCTGAAGCCGAGGCGCAGACCCTTGAGTTCATCAAACTGTGGGTGCCAGAGCGCAGTTCGCCGATCTGCGGCAACAG
CATCTGCCAGGATCGCCGCTTCCTGTATCGCCACATGCCGACGCTGGAAAACTGGTTCCACTACCGCAATCTGGATGTCT
CGACCCTCAAGGAACTGGCTGCGCGCTGGTCCCCCGAGCTGAAATTCAAGAAAGGCAGCACCCACCTGGCGCTCGACGAC
ATCCGTGAGTCGATTGCCGAGCTGCGCTTCTACCGTGAGCACTTCATCAAGCCTTGA

Upstream 100 bases:

>100_bases
CGATGTGATGTAACCGATGAATTAGGCAGTACGATTGATCGGCAGGAGTCTAGCACGGCAGGGTGAGCTAAACTGCGCGC
CTACGCTGAGGAGTCGACAC

Downstream 100 bases:

>100_bases
TCGAGACTCGCGCGTGCAGTGAATAATCTTCGCTGCACTCTTTCAGTGCGCAGGTCGGCTGGTTAGACTGCGCGCCTTTG
TCGCAGAGTCGTCGCCATGT

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MQNKQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTRQHGGSGLTQRVRESTVS
MAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLENWFHYRNLDVSTLKELAARWSPELKFKKGSTHLALDD
IRESIAELRFYREHFIKP

Sequences:

>Translated_178_residues
MQNKQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTRQHGGSGLTQRVRESTVS
MAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLENWFHYRNLDVSTLKELAARWSPELKFKKGSTHLALDD
IRESIAELRFYREHFIKP
>Mature_178_residues
MQNKQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTRQHGGSGLTQRVRESTVS
MAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLENWFHYRNLDVSTLKELAARWSPELKFKKGSTHLALDD
IRESIAELRFYREHFIKP

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=175, Percent_Identity=49.7142857142857, Blast_Score=181, Evalue=2e-46,
Organism=Escherichia coli, GI87082382, Length=177, Percent_Identity=68.361581920904, Blast_Score=253, Evalue=4e-69,
Organism=Caenorhabditis elegans, GI17557752, Length=176, Percent_Identity=50, Blast_Score=171, Evalue=2e-43,
Organism=Saccharomyces cerevisiae, GI6323088, Length=188, Percent_Identity=39.3617021276596, Blast_Score=133, Evalue=2e-32,
Organism=Drosophila melanogaster, GI21355135, Length=175, Percent_Identity=44.5714285714286, Blast_Score=166, Evalue=7e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 20617; Mature: 20617

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNKQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEW
CCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHCCCCEEEEECCCHHHHHHHHC
NTRQHGGSGLTQRVRESTVSMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC
TLENWFHYRNLDVSTLKELAARWSPELKFKKGSTHLALDDIRESIAELRFYREHFIKP
HHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQNKQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEW
CCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHCCCCEEEEECCCHHHHHHHHC
NTRQHGGSGLTQRVRESTVSMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC
TLENWFHYRNLDVSTLKELAARWSPELKFKKGSTHLALDDIRESIAELRFYREHFIKP
HHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA