Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
---|---|
Accession | NC_007005 |
Length | 6,093,698 |
Click here to switch to the map view.
The map label for this gene is yicG [C]
Identifier: 66043832
GI number: 66043832
Start: 641729
End: 642340
Strand: Direct
Name: yicG [C]
Synonym: Psyr_0565
Alternate gene names: 66043832
Gene position: 641729-642340 (Clockwise)
Preceding gene: 66043831
Following gene: 66043834
Centisome position: 10.53
GC content: 60.62
Gene sequence:
>612_bases ATGTTGCTGATGCTTTATCTGATCGCTATCACTGCTGAAGCCATGACGGGAGCCCTGTCTGCAGGGCGACGCGGGATGGA CTGGTTCGGCGTGGTGCTGATCGCCTGCGTCACTGCGCTGGGTGGCGGGTCGGTGCGCGACGTACTGATCGGTCATTACC CGCTGACCTGGGTCAAGCATCCGGAGTATCTGGTCCTGACCAGTGTGGCGGCCCTGGTGACGATCTTCATCGCGCCACTG ATGCGTCATCTGCGCTCACTGTTTCTGGTGCTCGACGCGCTGGGACTGGTGGCTTTTACCCTGATCGGCTGTATGACTGC GCTGGAGGCCGGGCACGGTCTGCTGATCGCGTCAGTCTGTGGCGTGATCACCGGGGTATTCGGCGGCATCCTGCGCGACA TCTTCTGCAACGACATCCCGCTGATCTTCCGCCGCGAGCTGTACGCCAGCGTGTCATTTCTGGCCGCGTGGTGTTTTCTG CTATGCCAGTACCTGCAGTTGCCGGACGAGCAAGCGGTGCTGATCACCCTGTTCGGTGGCCTGCTGCTGCGCCTGCTGGC GATTCGTTTCCGCTGGGAAATGCCCAAGTTTGTCTATAAAGACGAGCCTTGA
Upstream 100 bases:
>100_bases TTGATCGAGACTCGCGCGTGCAGTGAATAATCTTCGCTGCACTCTTTCAGTGCGCAGGTCGGCTGGTTAGACTGCGCGCC TTTGTCGCAGAGTCGTCGCC
Downstream 100 bases:
>100_bases AGAGGGGGAGAAGGCCACGAGCGGCATGCCCAAGCTAGTCTTGTGGGAGGCAATGTTGTTCAGTCATAACCATGTAGGAG CGAGCCGGGCCACGCTTCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 203; Mature: 203
Protein sequence:
>203_residues MLLMLYLIAITAEAMTGALSAGRRGMDWFGVVLIACVTALGGGSVRDVLIGHYPLTWVKHPEYLVLTSVAALVTIFIAPL MRHLRSLFLVLDALGLVAFTLIGCMTALEAGHGLLIASVCGVITGVFGGILRDIFCNDIPLIFRRELYASVSFLAAWCFL LCQYLQLPDEQAVLITLFGGLLLRLLAIRFRWEMPKFVYKDEP
Sequences:
>Translated_203_residues MLLMLYLIAITAEAMTGALSAGRRGMDWFGVVLIACVTALGGGSVRDVLIGHYPLTWVKHPEYLVLTSVAALVTIFIAPL MRHLRSLFLVLDALGLVAFTLIGCMTALEAGHGLLIASVCGVITGVFGGILRDIFCNDIPLIFRRELYASVSFLAAWCFL LCQYLQLPDEQAVLITLFGGLLLRLLAIRFRWEMPKFVYKDEP >Mature_203_residues MLLMLYLIAITAEAMTGALSAGRRGMDWFGVVLIACVTALGGGSVRDVLIGHYPLTWVKHPEYLVLTSVAALVTIFIAPL MRHLRSLFLVLDALGLVAFTLIGCMTALEAGHGLLIASVCGVITGVFGGILRDIFCNDIPLIFRRELYASVSFLAAWCFL LCQYLQLPDEQAVLITLFGGLLLRLLAIRFRWEMPKFVYKDEP
Specific function: Unknown
COG id: COG2860
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0126 family [H]
Homologues:
Organism=Escherichia coli, GI87082304, Length=202, Percent_Identity=55.9405940594059, Blast_Score=221, Evalue=3e-59, Organism=Escherichia coli, GI1786352, Length=191, Percent_Identity=40.8376963350785, Blast_Score=110, Evalue=5e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005115 [H]
Pfam domain/function: PF03458 UPF0126 [H]
EC number: NA
Molecular weight: Translated: 22336; Mature: 22336
Theoretical pI: Translated: 7.37; Mature: 7.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLMLYLIAITAEAMTGALSAGRRGMDWFGVVLIACVTALGGGSVRDVLIGHYPLTWVKH CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHCC PEYLVLTSVAALVTIFIAPLMRHLRSLFLVLDALGLVAFTLIGCMTALEAGHGLLIASVC CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH GVITGVFGGILRDIFCNDIPLIFRRELYASVSFLAAWCFLLCQYLQLPDEQAVLITLFGG HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH LLLRLLAIRFRWEMPKFVYKDEP HHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MLLMLYLIAITAEAMTGALSAGRRGMDWFGVVLIACVTALGGGSVRDVLIGHYPLTWVKH CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHCC PEYLVLTSVAALVTIFIAPLMRHLRSLFLVLDALGLVAFTLIGCMTALEAGHGLLIASVC CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH GVITGVFGGILRDIFCNDIPLIFRRELYASVSFLAAWCFLLCQYLQLPDEQAVLITLFGG HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH LLLRLLAIRFRWEMPKFVYKDEP HHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]