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The map label for this gene is cydA [H]

Identifier: 62390039

GI number: 62390039

Start: 1203559

End: 1205100

Strand: Reverse

Name: cydA [H]

Synonym: cg1301

Alternate gene names: 62390039

Gene position: 1205100-1203559 (Counterclockwise)

Preceding gene: 62390040

Following gene: 62390038

Centisome position: 36.71

GC content: 53.11

Gene sequence:

>1542_bases
GTGGATGTCGTCGACATCGCACGGTGGCAATTCGGAATTACCACCGTCTATCACTTCATTTTTGTCCCACTGACCATTGG
CTTAGCGCCGCTGGTCGCAATCATGCAAACGTTTTGGCAAGTTACCGGCAAAGAGCACTGGTATCGGGCCACAAGATTTT
TTGGCACTGTGCTGCTCATCAACTTCGCGGTTGGTGTAGCAACGGGCATTGTGCAGGAGTTCCAGTTCGGTATGAACTGG
TCGGAATATTCGCGTTTCGTCGGTGATGTTTTCGGCGGACCGCTGGCTTTGGAGGGTCTTATCGCGTTCTTCCTTGAGTC
TGTATTCCTGGGACTGTGGATTTTCGGATGGGGGAAGATTCCTGGTTGGTTGCACACTGCATCCATTTGGATCGTTGCTA
TTGCGACGAATATTTCTGCCTATTTCATCATCGTGGCCAACTCGTTTATGCAGCATCCGGTGGGTGCTGAGTATAACCCT
GAGACTGGTCGTGCGGAGCTTACTGATTTTTGGGCTCTTCTCACAAACTCCACCGCGCTGGCTGCGTTCCCGCATGCTGT
TGCCGGTGGTTTTTTAACAGCTGGAACTTTCGTTCTCGGAATTTCGGGTTGGTGGATTATTCGTGCGCACCGTCAGGCCA
AGAAGGCTGAGTCGGAAATCGAGTCGAAGCATTCGATGCACAGGCCCGCGTTGTGGGTTGGTTGGTGGACCACAGTTGTC
TCTTCCGTGGCGCTGTTCATCACTGGCGATATCCAGGCGAAGCTCATGTTCGTGCAGCAGCCAATGAAGATGGCGTCGGC
GGAATCCTTGTGTGAAACCGCCACAGATCCAAACTTCTCCATTCTGACAATTGGTACGCACAACAACTGCGATACGGTAA
CCCACCTGATCGATGTTCCGTTTGTGCTTCCATTCTTGGCTGAAGGAAAATTCACCGGTGTGACTTTGCAGGGTGTAAAC
CAGCTCCAAGCTGCAGCGGAGCAAGCATACGGTCCTGGCAACTACTCCCCTAACTTGTTTGTCACCTACTGGTCATTCCG
CGCAATGATCGGCCTGATGCTTGGTTCTTTGGCTATCGCTGCGATTGCGTGGCTGTTGCTGCGTAAGAAGCGCACACCAA
CTGGAAAGATTGCTCGTCTGTTCCAGATCGGCAGCCTCATTGCTATCCCGTTCCCATTCTTGGCCAACTCTGCTGGTTGG
ATCTTCACCGAGATGGGCCGCCAGCCTTGGGTGGTGCACCCGAACCCTGAATCTGCCGGCGATGCCCGAACAGAGATGAT
CCGGATGACTGTTGATATGGGTGTATCTGATCATGCGCCATGGCAAGTCTGGCTGACTCTCATTGGCTTCACGATTCTCT
ATCTCATTTTGTTCGTGGTGTGGGTGTGGCTGATTCGCCGCGCAGTTCTGATCGGACCACCAGAGGAAGGCGCTCCATCC
GTGGAGGCAAAGACTGGACCGGCAACCCCGATTGGTTCAGATATGCCCATGACACCGCTGCAATTTACTGCCGCTGCCCC
AACCACAGGTGAAAAGGAATAA

Upstream 100 bases:

>100_bases
TCTTATTGGTTCTTCGTTTTGTATCGATAAATACAATCGGTTTCCTGGCTTAATAAGGCTGTTCCTGTCAACCTGCAATG
GAAGAGGAAGTGTACCTAGC

Downstream 100 bases:

>100_bases
CCATGGATCTCAATACCTTTTGGTTTATTCTCATCGCATTTTTGTTTGCGGGATACTTTCTCCTCGAAGGATTCGACTTC
GGCGTCGGAATTTTGGCACC

Product: cytochrome D ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 513; Mature: 513

Protein sequence:

>513_residues
MDVVDIARWQFGITTVYHFIFVPLTIGLAPLVAIMQTFWQVTGKEHWYRATRFFGTVLLINFAVGVATGIVQEFQFGMNW
SEYSRFVGDVFGGPLALEGLIAFFLESVFLGLWIFGWGKIPGWLHTASIWIVAIATNISAYFIIVANSFMQHPVGAEYNP
ETGRAELTDFWALLTNSTALAAFPHAVAGGFLTAGTFVLGISGWWIIRAHRQAKKAESEIESKHSMHRPALWVGWWTTVV
SSVALFITGDIQAKLMFVQQPMKMASAESLCETATDPNFSILTIGTHNNCDTVTHLIDVPFVLPFLAEGKFTGVTLQGVN
QLQAAAEQAYGPGNYSPNLFVTYWSFRAMIGLMLGSLAIAAIAWLLLRKKRTPTGKIARLFQIGSLIAIPFPFLANSAGW
IFTEMGRQPWVVHPNPESAGDARTEMIRMTVDMGVSDHAPWQVWLTLIGFTILYLILFVVWVWLIRRAVLIGPPEEGAPS
VEAKTGPATPIGSDMPMTPLQFTAAAPTTGEKE

Sequences:

>Translated_513_residues
MDVVDIARWQFGITTVYHFIFVPLTIGLAPLVAIMQTFWQVTGKEHWYRATRFFGTVLLINFAVGVATGIVQEFQFGMNW
SEYSRFVGDVFGGPLALEGLIAFFLESVFLGLWIFGWGKIPGWLHTASIWIVAIATNISAYFIIVANSFMQHPVGAEYNP
ETGRAELTDFWALLTNSTALAAFPHAVAGGFLTAGTFVLGISGWWIIRAHRQAKKAESEIESKHSMHRPALWVGWWTTVV
SSVALFITGDIQAKLMFVQQPMKMASAESLCETATDPNFSILTIGTHNNCDTVTHLIDVPFVLPFLAEGKFTGVTLQGVN
QLQAAAEQAYGPGNYSPNLFVTYWSFRAMIGLMLGSLAIAAIAWLLLRKKRTPTGKIARLFQIGSLIAIPFPFLANSAGW
IFTEMGRQPWVVHPNPESAGDARTEMIRMTVDMGVSDHAPWQVWLTLIGFTILYLILFVVWVWLIRRAVLIGPPEEGAPS
VEAKTGPATPIGSDMPMTPLQFTAAAPTTGEKE
>Mature_513_residues
MDVVDIARWQFGITTVYHFIFVPLTIGLAPLVAIMQTFWQVTGKEHWYRATRFFGTVLLINFAVGVATGIVQEFQFGMNW
SEYSRFVGDVFGGPLALEGLIAFFLESVFLGLWIFGWGKIPGWLHTASIWIVAIATNISAYFIIVANSFMQHPVGAEYNP
ETGRAELTDFWALLTNSTALAAFPHAVAGGFLTAGTFVLGISGWWIIRAHRQAKKAESEIESKHSMHRPALWVGWWTTVV
SSVALFITGDIQAKLMFVQQPMKMASAESLCETATDPNFSILTIGTHNNCDTVTHLIDVPFVLPFLAEGKFTGVTLQGVN
QLQAAAEQAYGPGNYSPNLFVTYWSFRAMIGLMLGSLAIAAIAWLLLRKKRTPTGKIARLFQIGSLIAIPFPFLANSAGW
IFTEMGRQPWVVHPNPESAGDARTEMIRMTVDMGVSDHAPWQVWLTLIGFTILYLILFVVWVWLIRRAVLIGPPEEGAPS
VEAKTGPATPIGSDMPMTPLQFTAAAPTTGEKE

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=470, Percent_Identity=33.8297872340426, Blast_Score=251, Evalue=7e-68,
Organism=Escherichia coli, GI1787212, Length=529, Percent_Identity=32.703213610586, Blast_Score=248, Evalue=8e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 56565; Mature: 56565

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVVDIARWQFGITTVYHFIFVPLTIGLAPLVAIMQTFWQVTGKEHWYRATRFFGTVLLI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
NFAVGVATGIVQEFQFGMNWSEYSRFVGDVFGGPLALEGLIAFFLESVFLGLWIFGWGKI
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
PGWLHTASIWIVAIATNISAYFIIVANSFMQHPVGAEYNPETGRAELTDFWALLTNSTAL
CCHHHHHHEEEEEEECCCCEEEEEEECHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHH
AAFPHAVAGGFLTAGTFVLGISGWWIIRAHRQAKKAESEIESKHSMHRPALWVGWWTTVV
HHCCHHHHCCHHHHHHHEEECCCEEEEEEHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHH
SSVALFITGDIQAKLMFVQQPMKMASAESLCETATDPNFSILTIGTHNNCDTVTHLIDVP
HHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHH
FVLPFLAEGKFTGVTLQGVNQLQAAAEQAYGPGNYSPNLFVTYWSFRAMIGLMLGSLAIA
HHHHHHCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHH
AIAWLLLRKKRTPTGKIARLFQIGSLIAIPFPFLANSAGWIFTEMGRQPWVVHPNPESAG
HHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCHHHCCCCCCEEECCCCCCEEECCCCCCCC
DARTEMIRMTVDMGVSDHAPWQVWLTLIGFTILYLILFVVWVWLIRRAVLIGPPEEGAPS
CHHHHHEEEHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCC
VEAKTGPATPIGSDMPMTPLQFTAAAPTTGEKE
CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
>Mature Secondary Structure
MDVVDIARWQFGITTVYHFIFVPLTIGLAPLVAIMQTFWQVTGKEHWYRATRFFGTVLLI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
NFAVGVATGIVQEFQFGMNWSEYSRFVGDVFGGPLALEGLIAFFLESVFLGLWIFGWGKI
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
PGWLHTASIWIVAIATNISAYFIIVANSFMQHPVGAEYNPETGRAELTDFWALLTNSTAL
CCHHHHHHEEEEEEECCCCEEEEEEECHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHH
AAFPHAVAGGFLTAGTFVLGISGWWIIRAHRQAKKAESEIESKHSMHRPALWVGWWTTVV
HHCCHHHHCCHHHHHHHEEECCCEEEEEEHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHH
SSVALFITGDIQAKLMFVQQPMKMASAESLCETATDPNFSILTIGTHNNCDTVTHLIDVP
HHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHH
FVLPFLAEGKFTGVTLQGVNQLQAAAEQAYGPGNYSPNLFVTYWSFRAMIGLMLGSLAIA
HHHHHHCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHH
AIAWLLLRKKRTPTGKIARLFQIGSLIAIPFPFLANSAGWIFTEMGRQPWVVHPNPESAG
HHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCHHHCCCCCCEEECCCCCCEEECCCCCCCC
DARTEMIRMTVDMGVSDHAPWQVWLTLIGFTILYLILFVVWVWLIRRAVLIGPPEEGAPS
CHHHHHEEEHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCC
VEAKTGPATPIGSDMPMTPLQFTAAAPTTGEKE
CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]