| Definition | Corynebacterium glutamicum ATCC 13032, complete genome. |
|---|---|
| Accession | NC_006958 |
| Length | 3,282,708 |
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The map label for this gene is yejH [H]
Identifier: 62390040
GI number: 62390040
Start: 1205381
End: 1208296
Strand: Reverse
Name: yejH [H]
Synonym: cg1302
Alternate gene names: 62390040
Gene position: 1208296-1205381 (Counterclockwise)
Preceding gene: 62390041
Following gene: 62390039
Centisome position: 36.81
GC content: 47.15
Gene sequence:
>2916_bases ATGAGCCCATTCGATTCAAAGCTTGGTCGCGATACCCATTTTGGATTCCTCGATAAGACCACTGCTTCGCAACAACTGCT GAATCCTTCATTGATTTCTAATGAGGATCCGCACACCATGTTGCAGGCGATCAAGTTAGAGCTTCGTACCGCACAGTCTT TTACATTTTCAGTCGCTTTTATTTCCAGTCGCGGTATCGCGTTGTTGAAACAGGCATTGTTGGACTTCAAGGGTAAAGGA CGAATTATCACGTCCCGCTACCTGGATTTCAATGATCCAACGATGTTTCGTGAGCTTCTTACTTTGGAGAACGTGGAAGT CCTCATACATCAAGGCGATGGTTTCCACTCCAAGGGCTACGTTTTCCATCACGACGTGGGAATCACCGCAGTAGTGGGTA GTTCCAACCTCACAGATAATGCTCTGTTGGTAAACCGGGAATGGAATCTGAAGTTCTCTGCCAGCAAGAATGGCGACATT GCTTTTCAACTTGATGATGCGATTAATCGCCAAATTGAACGATCCACGCCACTGACGCCTGAATGGATCTCAGAGTATGA GGCAACCAGACGTGTACCTGAGCGTTTGGTGTCTCAGAATATTCCTCTCGAGGATCAAAGTAACGCCGGAACAATTGTTC CAAACGTCATGCAGGAAGAGGCCCTCGACGCTCTACTTTCTTTGACGGAGAAGGGAGAGAAACGTGGTGTCATTATTTCT GCGACAGGAACTGGCAAGACTATCCTGGCTGCTCTAGCTACAAGAATGCTCAAGCCTGAACGAGTTTTGTTTGTCGTGCA CCGCGAACAAATTCTGGATAAGGCGCGATCCGAGTTCATCAAAGTTCTTGAACGTCCCGCTGTTGATTTCGGAAAAATGT CTGGCTCGACCAAGGAGCTAGATAAGCCGTTTGTGTTTGGCACCATCCAAACGCTGACAAAGGAAGCTACACTTTCCCAG ATCTCCCCTACTGACTTTGATTTAGTCATCGTCGATGAAGTCCATCGCGCCGGTGCCGAATCCTATTTGGCATTGCTCAA TCATCTGCAGCCACAGTTTTTATTGGGCCTGACTGCTACCCCAGAGCGAACTGATGGATTCAATATTTATGAGTTGTTCG ATTTCAACGTGCCATATGAGATCCGACTTCAAGCTGCTTTAGAATCCAACATGCTCGTACCGTTTCACTATTACGGTGTC ACAGACTTCACGCTTGATTCTGAAACAACGGTGACTGATACCTCCAAACTAAGTGCCTTGGTGAGCGAAGAGAGAGTCCA TCACATTCTGGAGGCCCTCAAAACTTATGGTCATCCAGAAAATGTTCGTGGACTGATCTTCTGTTCCAAGACTGAAGAGG CTGAGGAGCTGTCAAAACTTCTCGACCAGTCGTTGTTTAATGGCAGCTTGCTTAAAACCAAGGCGCTCTCTGCGAAGGAC TCAATTCCCTACCGCGAAGAGGTTGTAGCTGAGCTGGAGTCCGGCGACCTGGACTACATCTTGACGGTTGACATCTTCAA TGAAGGCATTGATATTCCTTCGGTGAATCAAATCGTAATGATTCGTAGTACTCAATCAAGCATTGTGTTTACGCAGCAGC TCGGGCGTGGACTCCGAAAAGCTGCTGGCAAAGACCATCTGCGCGTTATTGATTTCATTGGCAACTACGCGAACAACTAT CTCATTCCCATCGCATTGTTTGGCGATAATTCTCGCAATAAGAACAGCATCAGACGCCGCCTGATTGAGAGCGATATTGA TGGAACAATCTCAGGTGTTTCAAGTGTTAACTTTGATCCCATCGCGCAGGAGAGAATTTTTGCTGCGTTGAAGGCTGCGA AGTTGGACTCAAAAGCACAATTCAAGCAGGATATTGTTCAGCTTCAAGATCGACTCAATCATGTGCCAGCACTGTTAGAC TTCGCTCGCTTCAATACTGTTGATCCGTTTATCCTTGCCACGCATTCTGGCAACTACTGGTCGCTGCTCAGTTCAGTGAA GTTTGTCGATCACGCTCCCAGCGAATCGGAGAAGTACTTTCTGGATTTCCTTACCGGAGAGCTTCTTAACGGCAAGCGAC CTCATGAGCTGTTGCTGATCCAGGAACTAATGAAACAGCCTGAAACTTCTACTGAAGAATTCCGTAAGCTCTTGCAGGCC CAATCGACTAGTTCAGATGAGCAAACAATCAACTCGGTTGAAAGGATTTTGAGCCAAGAATTCTATACGGGACCAAACCG CAAGAAGTTTGGCGAACATCCGATCCTCTCTGTTCAAAACCGCACCTACTCTTTTACTCCCGAGTTCCGACGTGCCCTCG ACGAAAGCCTAGAAGTGACGGACCGAGATGAGGCTGCTCAGAATTTTAAGTTTCACGTCCAAGACATCATCGACACTGGT TTGTTTATCGCCAGAAACAATGGATTTTGGCAAGGAAACCTCGTTGTTGGCGAGAGATACTCCCGACGAGATGTCTGCCG AATTCTCAATTGGGAACGAAACAACGAGAGCACGATTTATGGATACAAAGTGGACAGTTACACATCTACTTGCCCAATCT TTGTGACCTATCACAAGGCTGATGATGTATCCGAAAGTACTCGTTACCAGGATGAACTCGTCGATCCGAATACCCTTCAT TGGTATTCCCGCGGCAACCGAAAGATCACGTCTAATGAGATCAAGCCCATCGCTGCGAATGCTGTGGATCTTCATGTTTT TGTGAAGAAGGACGATGCCGAAGGCCTTGATTTCTTCTACCTTGGTCAAGCGCATTCAGAAAACAGCAAACAGTCATCGA TGCCCGGAAACAAAGGAGTTGTGCAACCGGTGGTCACAATGGATCTACAGTTCGACACACCCGTCGAACAAAGCCTGTTT GAGTACCTGAGCACAAATCTCGCCGTAACGGAGTAA
Upstream 100 bases:
>100_bases ATGCTGAGATCCGCTGGGTGGCACCACACGAATTGGAATCTTTGGAGTGGGCACCTGCTGATATTCCTGCGGTGAAACTT CTCGTCGAGCAGCTTGCTTA
Downstream 100 bases:
>100_bases CCACCGCAACCAAGCGTCGAAAAGCAAAATCTTTTCGACGCTTTTTGGTGACTTGTCAACAAGGGGGAGCGAAATCAGTC ATTGACAGGAAAAGGTTGAC
Product: HKD family nuclease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 971; Mature: 970
Protein sequence:
>971_residues MSPFDSKLGRDTHFGFLDKTTASQQLLNPSLISNEDPHTMLQAIKLELRTAQSFTFSVAFISSRGIALLKQALLDFKGKG RIITSRYLDFNDPTMFRELLTLENVEVLIHQGDGFHSKGYVFHHDVGITAVVGSSNLTDNALLVNREWNLKFSASKNGDI AFQLDDAINRQIERSTPLTPEWISEYEATRRVPERLVSQNIPLEDQSNAGTIVPNVMQEEALDALLSLTEKGEKRGVIIS ATGTGKTILAALATRMLKPERVLFVVHREQILDKARSEFIKVLERPAVDFGKMSGSTKELDKPFVFGTIQTLTKEATLSQ ISPTDFDLVIVDEVHRAGAESYLALLNHLQPQFLLGLTATPERTDGFNIYELFDFNVPYEIRLQAALESNMLVPFHYYGV TDFTLDSETTVTDTSKLSALVSEERVHHILEALKTYGHPENVRGLIFCSKTEEAEELSKLLDQSLFNGSLLKTKALSAKD SIPYREEVVAELESGDLDYILTVDIFNEGIDIPSVNQIVMIRSTQSSIVFTQQLGRGLRKAAGKDHLRVIDFIGNYANNY LIPIALFGDNSRNKNSIRRRLIESDIDGTISGVSSVNFDPIAQERIFAALKAAKLDSKAQFKQDIVQLQDRLNHVPALLD FARFNTVDPFILATHSGNYWSLLSSVKFVDHAPSESEKYFLDFLTGELLNGKRPHELLLIQELMKQPETSTEEFRKLLQA QSTSSDEQTINSVERILSQEFYTGPNRKKFGEHPILSVQNRTYSFTPEFRRALDESLEVTDRDEAAQNFKFHVQDIIDTG LFIARNNGFWQGNLVVGERYSRRDVCRILNWERNNESTIYGYKVDSYTSTCPIFVTYHKADDVSESTRYQDELVDPNTLH WYSRGNRKITSNEIKPIAANAVDLHVFVKKDDAEGLDFFYLGQAHSENSKQSSMPGNKGVVQPVVTMDLQFDTPVEQSLF EYLSTNLAVTE
Sequences:
>Translated_971_residues MSPFDSKLGRDTHFGFLDKTTASQQLLNPSLISNEDPHTMLQAIKLELRTAQSFTFSVAFISSRGIALLKQALLDFKGKG RIITSRYLDFNDPTMFRELLTLENVEVLIHQGDGFHSKGYVFHHDVGITAVVGSSNLTDNALLVNREWNLKFSASKNGDI AFQLDDAINRQIERSTPLTPEWISEYEATRRVPERLVSQNIPLEDQSNAGTIVPNVMQEEALDALLSLTEKGEKRGVIIS ATGTGKTILAALATRMLKPERVLFVVHREQILDKARSEFIKVLERPAVDFGKMSGSTKELDKPFVFGTIQTLTKEATLSQ ISPTDFDLVIVDEVHRAGAESYLALLNHLQPQFLLGLTATPERTDGFNIYELFDFNVPYEIRLQAALESNMLVPFHYYGV TDFTLDSETTVTDTSKLSALVSEERVHHILEALKTYGHPENVRGLIFCSKTEEAEELSKLLDQSLFNGSLLKTKALSAKD SIPYREEVVAELESGDLDYILTVDIFNEGIDIPSVNQIVMIRSTQSSIVFTQQLGRGLRKAAGKDHLRVIDFIGNYANNY LIPIALFGDNSRNKNSIRRRLIESDIDGTISGVSSVNFDPIAQERIFAALKAAKLDSKAQFKQDIVQLQDRLNHVPALLD FARFNTVDPFILATHSGNYWSLLSSVKFVDHAPSESEKYFLDFLTGELLNGKRPHELLLIQELMKQPETSTEEFRKLLQA QSTSSDEQTINSVERILSQEFYTGPNRKKFGEHPILSVQNRTYSFTPEFRRALDESLEVTDRDEAAQNFKFHVQDIIDTG LFIARNNGFWQGNLVVGERYSRRDVCRILNWERNNESTIYGYKVDSYTSTCPIFVTYHKADDVSESTRYQDELVDPNTLH WYSRGNRKITSNEIKPIAANAVDLHVFVKKDDAEGLDFFYLGQAHSENSKQSSMPGNKGVVQPVVTMDLQFDTPVEQSLF EYLSTNLAVTE >Mature_970_residues SPFDSKLGRDTHFGFLDKTTASQQLLNPSLISNEDPHTMLQAIKLELRTAQSFTFSVAFISSRGIALLKQALLDFKGKGR IITSRYLDFNDPTMFRELLTLENVEVLIHQGDGFHSKGYVFHHDVGITAVVGSSNLTDNALLVNREWNLKFSASKNGDIA FQLDDAINRQIERSTPLTPEWISEYEATRRVPERLVSQNIPLEDQSNAGTIVPNVMQEEALDALLSLTEKGEKRGVIISA TGTGKTILAALATRMLKPERVLFVVHREQILDKARSEFIKVLERPAVDFGKMSGSTKELDKPFVFGTIQTLTKEATLSQI SPTDFDLVIVDEVHRAGAESYLALLNHLQPQFLLGLTATPERTDGFNIYELFDFNVPYEIRLQAALESNMLVPFHYYGVT DFTLDSETTVTDTSKLSALVSEERVHHILEALKTYGHPENVRGLIFCSKTEEAEELSKLLDQSLFNGSLLKTKALSAKDS IPYREEVVAELESGDLDYILTVDIFNEGIDIPSVNQIVMIRSTQSSIVFTQQLGRGLRKAAGKDHLRVIDFIGNYANNYL IPIALFGDNSRNKNSIRRRLIESDIDGTISGVSSVNFDPIAQERIFAALKAAKLDSKAQFKQDIVQLQDRLNHVPALLDF ARFNTVDPFILATHSGNYWSLLSSVKFVDHAPSESEKYFLDFLTGELLNGKRPHELLLIQELMKQPETSTEEFRKLLQAQ STSSDEQTINSVERILSQEFYTGPNRKKFGEHPILSVQNRTYSFTPEFRRALDESLEVTDRDEAAQNFKFHVQDIIDTGL FIARNNGFWQGNLVVGERYSRRDVCRILNWERNNESTIYGYKVDSYTSTCPIFVTYHKADDVSESTRYQDELVDPNTLHW YSRGNRKITSNEIKPIAANAVDLHVFVKKDDAEGLDFFYLGQAHSENSKQSSMPGNKGVVQPVVTMDLQFDTPVEQSLFE YLSTNLAVTE
Specific function: Unknown
COG id: COG1061
COG function: function code KL; DNA or RNA helicases of superfamily II
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1788511, Length=383, Percent_Identity=27.4151436031332, Blast_Score=104, Evalue=3e-23, Organism=Saccharomyces cerevisiae, GI6320539, Length=444, Percent_Identity=24.7747747747748, Blast_Score=123, Evalue=1e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR006935 [H]
Pfam domain/function: PF00271 Helicase_C; PF04851 ResIII [H]
EC number: NA
Molecular weight: Translated: 109533; Mature: 109402
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPFDSKLGRDTHFGFLDKTTASQQLLNPSLISNEDPHTMLQAIKLELRTAQSFTFSVAF CCCCCHHCCCCCCCCCCCCCCHHHHHCCCHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEE ISSRGIALLKQALLDFKGKGRIITSRYLDFNDPTMFRELLTLENVEVLIHQGDGFHSKGY ECCCCHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEECCCCCCCCCE VFHHDVGITAVVGSSNLTDNALLVNREWNLKFSASKNGDIAFQLDDAINRQIERSTPLTP EEEECCCEEEEECCCCCCCCEEEEEECCCEEEECCCCCCEEEEECHHHHHHHHCCCCCCH EWISEYEATRRVPERLVSQNIPLEDQSNAGTIVPNVMQEEALDALLSLTEKGEKRGVIIS HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE ATGTGKTILAALATRMLKPERVLFVVHREQILDKARSEFIKVLERPAVDFGKMSGSTKEL ECCCCHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHC DKPFVFGTIQTLTKEATLSQISPTDFDLVIVDEVHRAGAESYLALLNHLQPQFLLGLTAT CCCEEEHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCEEEECCC PERTDGFNIYELFDFNVPYEIRLQAALESNMLVPFHYYGVTDFTLDSETTVTDTSKLSAL CCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEECCCEEEEECCCCEECCHHHHHHH VSEERVHHILEALKTYGHPENVRGLIFCSKTEEAEELSKLLDQSLFNGSLLKTKALSAKD HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEHHCCCCC SIPYREEVVAELESGDLDYILTVDIFNEGIDIPSVNQIVMIRSTQSSIVFTQQLGRGLRK CCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCEEEHHHHHHHHHH AAGKDHLRVIDFIGNYANNYLIPIALFGDNSRNKNSIRRRLIESDIDGTISGVSSVNFDP HCCCCCEEHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC IAQERIFAALKAAKLDSKAQFKQDIVQLQDRLNHVPALLDFARFNTVDPFILATHSGNYW HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHH SLLSSVKFVDHAPSESEKYFLDFLTGELLNGKRPHELLLIQELMKQPETSTEEFRKLLQA HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH QSTSSDEQTINSVERILSQEFYTGPNRKKFGEHPILSVQNRTYSFTPEFRRALDESLEVT HCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEECHHHHHHHHHHCCCC DRDEAAQNFKFHVQDIIDTGLFIARNNGFWQGNLVVGERYSRRDVCRILNWERNNESTIY CCHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCEEE GYKVDSYTSTCPIFVTYHKADDVSESTRYQDELVDPNTLHWYSRGNRKITSNEIKPIAAN EEEECCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCEEEEECCCCEEECCCCCEEECC AVDLHVFVKKDDAEGLDFFYLGQAHSENSKQSSMPGNKGVVQPVVTMDLQFDTPVEQSLF EEEEEEEEEECCCCCCCEEEECCCCCCCCCHHCCCCCCCCCCEEEEEEEECCCCHHHHHH EYLSTNLAVTE HHHHCCCEECC >Mature Secondary Structure SPFDSKLGRDTHFGFLDKTTASQQLLNPSLISNEDPHTMLQAIKLELRTAQSFTFSVAF CCCCHHCCCCCCCCCCCCCCHHHHHCCCHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEE ISSRGIALLKQALLDFKGKGRIITSRYLDFNDPTMFRELLTLENVEVLIHQGDGFHSKGY ECCCCHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEECCCCCCCCCE VFHHDVGITAVVGSSNLTDNALLVNREWNLKFSASKNGDIAFQLDDAINRQIERSTPLTP EEEECCCEEEEECCCCCCCCEEEEEECCCEEEECCCCCCEEEEECHHHHHHHHCCCCCCH EWISEYEATRRVPERLVSQNIPLEDQSNAGTIVPNVMQEEALDALLSLTEKGEKRGVIIS HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE ATGTGKTILAALATRMLKPERVLFVVHREQILDKARSEFIKVLERPAVDFGKMSGSTKEL ECCCCHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHC DKPFVFGTIQTLTKEATLSQISPTDFDLVIVDEVHRAGAESYLALLNHLQPQFLLGLTAT CCCEEEHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCEEEECCC PERTDGFNIYELFDFNVPYEIRLQAALESNMLVPFHYYGVTDFTLDSETTVTDTSKLSAL CCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEECCCEEEEECCCCEECCHHHHHHH VSEERVHHILEALKTYGHPENVRGLIFCSKTEEAEELSKLLDQSLFNGSLLKTKALSAKD HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEHHCCCCC SIPYREEVVAELESGDLDYILTVDIFNEGIDIPSVNQIVMIRSTQSSIVFTQQLGRGLRK CCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCEEEHHHHHHHHHH AAGKDHLRVIDFIGNYANNYLIPIALFGDNSRNKNSIRRRLIESDIDGTISGVSSVNFDP HCCCCCEEHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC IAQERIFAALKAAKLDSKAQFKQDIVQLQDRLNHVPALLDFARFNTVDPFILATHSGNYW HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHH SLLSSVKFVDHAPSESEKYFLDFLTGELLNGKRPHELLLIQELMKQPETSTEEFRKLLQA HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH QSTSSDEQTINSVERILSQEFYTGPNRKKFGEHPILSVQNRTYSFTPEFRRALDESLEVT HCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEECHHHHHHHHHHCCCC DRDEAAQNFKFHVQDIIDTGLFIARNNGFWQGNLVVGERYSRRDVCRILNWERNNESTIY CCHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCEEE GYKVDSYTSTCPIFVTYHKADDVSESTRYQDELVDPNTLHWYSRGNRKITSNEIKPIAAN EEEECCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCEEEEECCCCEEECCCCCEEECC AVDLHVFVKKDDAEGLDFFYLGQAHSENSKQSSMPGNKGVVQPVVTMDLQFDTPVEQSLF EEEEEEEEEECCCCCCCEEEECCCCCCCCCHHCCCCCCCCCCEEEEEEEECCCCHHHHHH EYLSTNLAVTE HHHHCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]