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The map label for this gene is cydB [H]

Identifier: 62390038

GI number: 62390038

Start: 1202555

End: 1203556

Strand: Reverse

Name: cydB [H]

Synonym: cg1300

Alternate gene names: 62390038

Gene position: 1203556-1202555 (Counterclockwise)

Preceding gene: 62390039

Following gene: 62390037

Centisome position: 36.66

GC content: 55.19

Gene sequence:

>1002_bases
ATGGATCTCAATACCTTTTGGTTTATTCTCATCGCATTTTTGTTTGCGGGATACTTTCTCCTCGAAGGATTCGACTTCGG
CGTCGGAATTTTGGCACCCATCATCGGTAAAGATTCAGCGGCTAGGAACACAGTGATCCGTACGATTGGCCCTGTCTGGG
ACGGAAATGAAGTGTGGCTGATCGTGGCAGGTGGCGCTTTGTTTGCTGCCTTCCCTGAGTGGTACGCAACGATGTTCTCC
GGAATGTATCTGCCGCTGTTCCTCGTGCTTGTGTCGTTGATCATGCGCGTGGTGGGCCTTGAATGGCGCAAGAAAGTCGA
TGATCCTCGTTGGCAAAAGTGGTCTGACCGGGCCATCTTTATTGGTTCTTGGACTCCACCGCTGATGTGGGGATTCATCT
TCGCCAATATTTTGCGTGGCATGCCCCTCAAGGCGGATCACACCATCGATGCTGCGGCAGCCCTTCCTGGCATGGTCAAC
GTCTTCGCCATTCTGGGTGCACTTGCGTTCACCGCACTGTTCGCCCTTCATGGTCTCGCATTCATCCGCCTGAAAACTGC
TGGTCGGGTGCGCACCGATGCGGCGAAGGCAGCTCCAGTAGTCGCACTTCTTGCTGCGGTGACTGGTGGACCTTTCGTGT
TGTGGGCTGCCATCGCATACGGCCGTTCCTGGTCCTGGATCCTCGCAGTGCTGATCATCGCAGCGGTTCTCGGTGGAGCT
TTCGCACTGATCAAAGACCGCGATGGATTAAGCTTCCTGTCCACTTCCGTCGCTGTCATCGGTGTCGTTGCACTGCTGTT
TAGTTCGCTTTTCCCCAACGTCATGCCAACAACGCTTGCTGATGGCGTGAGCCTGGATATCTGGAACGCCTCCGCAAGCG
CCTACGCATTTACTATCCTGACTTGGACCGCCGCTGTGATCGCACCGCTGGTTGTCCTCTACCAAGGCTGGACCTACTGG
GTGTTCCGCAAACGACTTCACGCCGAGCCAGTGTCTGCTTAA

Upstream 100 bases:

>100_bases
AGGCAAAGACTGGACCGGCAACCCCGATTGGTTCAGATATGCCCATGACACCGCTGCAATTTACTGCCGCTGCCCCAACC
ACAGGTGAAAAGGAATAACC

Downstream 100 bases:

>100_bases
AGTTGGAAAAATTGAGTACTAAATCTTCAGCTCCTGCAAAAAGGCGCGCCGGCCCCGTCGATCCGCGGCTTTTGCGCCTA
TCCCCCGCTACCCGCCGTTG

Product: cytochrome D terminal oxidase polypeptide subunit

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MDLNTFWFILIAFLFAGYFLLEGFDFGVGILAPIIGKDSAARNTVIRTIGPVWDGNEVWLIVAGGALFAAFPEWYATMFS
GMYLPLFLVLVSLIMRVVGLEWRKKVDDPRWQKWSDRAIFIGSWTPPLMWGFIFANILRGMPLKADHTIDAAAALPGMVN
VFAILGALAFTALFALHGLAFIRLKTAGRVRTDAAKAAPVVALLAAVTGGPFVLWAAIAYGRSWSWILAVLIIAAVLGGA
FALIKDRDGLSFLSTSVAVIGVVALLFSSLFPNVMPTTLADGVSLDIWNASASAYAFTILTWTAAVIAPLVVLYQGWTYW
VFRKRLHAEPVSA

Sequences:

>Translated_333_residues
MDLNTFWFILIAFLFAGYFLLEGFDFGVGILAPIIGKDSAARNTVIRTIGPVWDGNEVWLIVAGGALFAAFPEWYATMFS
GMYLPLFLVLVSLIMRVVGLEWRKKVDDPRWQKWSDRAIFIGSWTPPLMWGFIFANILRGMPLKADHTIDAAAALPGMVN
VFAILGALAFTALFALHGLAFIRLKTAGRVRTDAAKAAPVVALLAAVTGGPFVLWAAIAYGRSWSWILAVLIIAAVLGGA
FALIKDRDGLSFLSTSVAVIGVVALLFSSLFPNVMPTTLADGVSLDIWNASASAYAFTILTWTAAVIAPLVVLYQGWTYW
VFRKRLHAEPVSA
>Mature_333_residues
MDLNTFWFILIAFLFAGYFLLEGFDFGVGILAPIIGKDSAARNTVIRTIGPVWDGNEVWLIVAGGALFAAFPEWYATMFS
GMYLPLFLVLVSLIMRVVGLEWRKKVDDPRWQKWSDRAIFIGSWTPPLMWGFIFANILRGMPLKADHTIDAAAALPGMVN
VFAILGALAFTALFALHGLAFIRLKTAGRVRTDAAKAAPVVALLAAVTGGPFVLWAAIAYGRSWSWILAVLIIAAVLGGA
FALIKDRDGLSFLSTSVAVIGVVALLFSSLFPNVMPTTLADGVSLDIWNASASAYAFTILTWTAAVIAPLVVLYQGWTYW
VFRKRLHAEPVSA

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=366, Percent_Identity=31.1475409836066, Blast_Score=189, Evalue=3e-49,
Organism=Escherichia coli, GI1787213, Length=362, Percent_Identity=31.767955801105, Blast_Score=170, Evalue=1e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36222; Mature: 36222

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNTFWFILIAFLFAGYFLLEGFDFGVGILAPIIGKDSAARNTVIRTIGPVWDGNEVWL
CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEE
IVAGGALFAAFPEWYATMFSGMYLPLFLVLVSLIMRVVGLEWRKKVDDPRWQKWSDRAIF
EEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCEEE
IGSWTPPLMWGFIFANILRGMPLKADHTIDAAAALPGMVNVFAILGALAFTALFALHGLA
EECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIRLKTAGRVRTDAAKAAPVVALLAAVTGGPFVLWAAIAYGRSWSWILAVLIIAAVLGGA
HEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
FALIKDRDGLSFLSTSVAVIGVVALLFSSLFPNVMPTTLADGVSLDIWNASASAYAFTIL
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEECCCCHHHHHHHH
TWTAAVIAPLVVLYQGWTYWVFRKRLHAEPVSA
HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDLNTFWFILIAFLFAGYFLLEGFDFGVGILAPIIGKDSAARNTVIRTIGPVWDGNEVWL
CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEE
IVAGGALFAAFPEWYATMFSGMYLPLFLVLVSLIMRVVGLEWRKKVDDPRWQKWSDRAIF
EEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCEEE
IGSWTPPLMWGFIFANILRGMPLKADHTIDAAAALPGMVNVFAILGALAFTALFALHGLA
EECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIRLKTAGRVRTDAAKAAPVVALLAAVTGGPFVLWAAIAYGRSWSWILAVLIIAAVLGGA
HEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
FALIKDRDGLSFLSTSVAVIGVVALLFSSLFPNVMPTTLADGVSLDIWNASASAYAFTIL
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEECCCCHHHHHHHH
TWTAAVIAPLVVLYQGWTYWVFRKRLHAEPVSA
HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]