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The map label for this gene is cydD [H]

Identifier: 62390037

GI number: 62390037

Start: 1201008

End: 1202543

Strand: Reverse

Name: cydD [H]

Synonym: cg1299

Alternate gene names: 62390037

Gene position: 1202543-1201008 (Counterclockwise)

Preceding gene: 62390038

Following gene: 62390036

Centisome position: 36.63

GC content: 59.7

Gene sequence:

>1536_bases
TTGAGTACTAAATCTTCAGCTCCTGCAAAAAGGCGCGCCGGCCCCGTCGATCCGCGGCTTTTGCGCCTATCCCCCGCTAC
CCGCCGTTGGGTGATAATCGCAGGTGTTCTCACCGCGTTGAAAACCCTCGCGACAGTCGCAATGGGCTTGCTCATCGGCC
AGATGGCAGCGGGCATCATTGAGGTTTCGGGAAGTTCTTTGCCCCGAATGGAACTCATCGCGCTCGCCATCACGGTGGTT
GTGCGCGGACTTCTTGCGTGGGCACAGGATCGGTTCGCGCAACGCGCATCGTCCCAGGTGACTGTGGATCTTCGGGAGAA
AACCCTGCGGCACCTGGCACAAAGCGATCCCCGCACCATCGATCAAGCCTTGTGGCGCACCCGTTTGACCTCTGGCCTTG
ATGGTTTGGGGCCTTACCTCACCGGATTTTTGCCAGCTCTAGCCGCCACGATCATTGCCACCCCGGTCATGCTCGCGGTG
GTGGGTTGGCTGGATGTTGGGTCCATGGTCATCGCGATCATCACGCTCCCCCTCATTCCGGTGTTCATGTGGCTGGTGGG
AACACTCACCGCAGGTCGCACCGAACAACGCCTCAGCGACCTAGCCATTTTGGGAGGTCAGCTGCTTGATCTCATCGCAG
GCTTGCCCACCTTGCGAGCATTCAGGCGCCACCAAGACATGGCAGCTCAGGTCACGCGACTATCCTCCCAACATGCAAGC
TCCACGTTGAGCGTGCTGAAAATCGCGTTCCTTTCCAGCTTTGTGTTGGAATTTTTGGCCACACTATCGGTCGCATTGGT
AGCGGTTGGCATCGGATTTCGCCTGCTCGCGGGCGATCTCACCCTCGCCATCGGCCTGACCGTACTGATCATCATCCCAG
AGGTCTACGCGCCGATCCGCGAAGTCGGCACCCGCTTCCACGACGCCCAAGACGGCCTGGTTGCCACCGATGAGATCCTA
AAATTACTCAGCGTTTCTTCGCTTGTCGACGCGCCTACCCACACACCCCGCGACGTTGCAGGCGGGCTGGAGGTGAGCGT
CGAAAAGCTTCGCGCTGATGGACGCGATGGGCCGAGGCCTGCTGATTTGTCGTTCACCGCAAAGCCTGGGCAGTTGACGG
TGCTGTGGGGGCCAAACGGCAGCGGCAAATCCACGGCCTTGCTAGCGGTGTTGGGCTTGGCGACGGAAGGCATCACTGGA
GAGGTTTCCGTCAAGGATGCCTCGGGCCAGGAATTTAAGGACAGCGCATTGTGGGAGCACTGCGCATATTTGCCGCAGCG
GCCGGTCATTGATCCGGAAAGTGTCAGTGATTATGCGGAACTGTCGCTTGGGCAGCGCCAACGGCTTGCGCTGAAACGTG
AGCTTGGGGCGCAATTGCTCCTGTTGGATGAGCCGACCGCGCACCTGGATCCAGACAACGCTGCGATCATGATCCAGCAA
TTGCAGGCTGAAGCCCGCCGAGGCACCACAGTACTGGCGGTTTCGCATGATCCTTTGCTGCGTGCGGCTGCCGATGAAGT
GGTGGAGGTCAAATGA

Upstream 100 bases:

>100_bases
CTGTGATCGCACCGCTGGTTGTCCTCTACCAAGGCTGGACCTACTGGGTGTTCCGCAAACGACTTCACGCCGAGCCAGTG
TCTGCTTAAAGTTGGAAAAA

Downstream 100 bases:

>100_bases
ACACCCTGGTAAAACTTCGTTTCCGCGAGCTAATTCCCGCCGTTGTTGCAGGTAGCGTCACGATGATCGCCTCCATCACC
CTGACGGTGGTGTCGGCCTG

Product: ABC-type multidrug/protein/lipid transport system, ATPase component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 511; Mature: 510

Protein sequence:

>511_residues
MSTKSSAPAKRRAGPVDPRLLRLSPATRRWVIIAGVLTALKTLATVAMGLLIGQMAAGIIEVSGSSLPRMELIALAITVV
VRGLLAWAQDRFAQRASSQVTVDLREKTLRHLAQSDPRTIDQALWRTRLTSGLDGLGPYLTGFLPALAATIIATPVMLAV
VGWLDVGSMVIAIITLPLIPVFMWLVGTLTAGRTEQRLSDLAILGGQLLDLIAGLPTLRAFRRHQDMAAQVTRLSSQHAS
STLSVLKIAFLSSFVLEFLATLSVALVAVGIGFRLLAGDLTLAIGLTVLIIIPEVYAPIREVGTRFHDAQDGLVATDEIL
KLLSVSSLVDAPTHTPRDVAGGLEVSVEKLRADGRDGPRPADLSFTAKPGQLTVLWGPNGSGKSTALLAVLGLATEGITG
EVSVKDASGQEFKDSALWEHCAYLPQRPVIDPESVSDYAELSLGQRQRLALKRELGAQLLLLDEPTAHLDPDNAAIMIQQ
LQAEARRGTTVLAVSHDPLLRAAADEVVEVK

Sequences:

>Translated_511_residues
MSTKSSAPAKRRAGPVDPRLLRLSPATRRWVIIAGVLTALKTLATVAMGLLIGQMAAGIIEVSGSSLPRMELIALAITVV
VRGLLAWAQDRFAQRASSQVTVDLREKTLRHLAQSDPRTIDQALWRTRLTSGLDGLGPYLTGFLPALAATIIATPVMLAV
VGWLDVGSMVIAIITLPLIPVFMWLVGTLTAGRTEQRLSDLAILGGQLLDLIAGLPTLRAFRRHQDMAAQVTRLSSQHAS
STLSVLKIAFLSSFVLEFLATLSVALVAVGIGFRLLAGDLTLAIGLTVLIIIPEVYAPIREVGTRFHDAQDGLVATDEIL
KLLSVSSLVDAPTHTPRDVAGGLEVSVEKLRADGRDGPRPADLSFTAKPGQLTVLWGPNGSGKSTALLAVLGLATEGITG
EVSVKDASGQEFKDSALWEHCAYLPQRPVIDPESVSDYAELSLGQRQRLALKRELGAQLLLLDEPTAHLDPDNAAIMIQQ
LQAEARRGTTVLAVSHDPLLRAAADEVVEVK
>Mature_510_residues
STKSSAPAKRRAGPVDPRLLRLSPATRRWVIIAGVLTALKTLATVAMGLLIGQMAAGIIEVSGSSLPRMELIALAITVVV
RGLLAWAQDRFAQRASSQVTVDLREKTLRHLAQSDPRTIDQALWRTRLTSGLDGLGPYLTGFLPALAATIIATPVMLAVV
GWLDVGSMVIAIITLPLIPVFMWLVGTLTAGRTEQRLSDLAILGGQLLDLIAGLPTLRAFRRHQDMAAQVTRLSSQHASS
TLSVLKIAFLSSFVLEFLATLSVALVAVGIGFRLLAGDLTLAIGLTVLIIIPEVYAPIREVGTRFHDAQDGLVATDEILK
LLSVSSLVDAPTHTPRDVAGGLEVSVEKLRADGRDGPRPADLSFTAKPGQLTVLWGPNGSGKSTALLAVLGLATEGITGE
VSVKDASGQEFKDSALWEHCAYLPQRPVIDPESVSDYAELSLGQRQRLALKRELGAQLLLLDEPTAHLDPDNAAIMIQQL
QAEARRGTTVLAVSHDPLLRAAADEVVEVK

Specific function: Somehow involved in the cytochrome D branch of aerobic respiration. Seems to be a component of a transport system [H]

COG id: COG4988

COG function: function code CO; ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1787113, Length=561, Percent_Identity=28.5204991087344, Blast_Score=154, Evalue=1e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017940
- InterPro:   IPR014216
- InterPro:   IPR001140
- InterPro:   IPR011527
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00664 ABC_membrane; PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 54473; Mature: 54342

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: PS50929 ABC_TM1F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTKSSAPAKRRAGPVDPRLLRLSPATRRWVIIAGVLTALKTLATVAMGLLIGQMAAGII
CCCCCCCCHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
EVSGSSLPRMELIALAITVVVRGLLAWAQDRFAQRASSQVTVDLREKTLRHLAQSDPRTI
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCHHH
DQALWRTRLTSGLDGLGPYLTGFLPALAATIIATPVMLAVVGWLDVGSMVIAIITLPLIP
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFMWLVGTLTAGRTEQRLSDLAILGGQLLDLIAGLPTLRAFRRHQDMAAQVTRLSSQHAS
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
STLSVLKIAFLSSFVLEFLATLSVALVAVGIGFRLLAGDLTLAIGLTVLIIIPEVYAPIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVGTRFHDAQDGLVATDEILKLLSVSSLVDAPTHTPRDVAGGLEVSVEKLRADGRDGPRP
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHCCCCCCCCC
ADLSFTAKPGQLTVLWGPNGSGKSTALLAVLGLATEGITGEVSVKDASGQEFKDSALWEH
CCCEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHH
CAYLPQRPVIDPESVSDYAELSLGQRQRLALKRELGAQLLLLDEPTAHLDPDNAAIMIQQ
HHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHH
LQAEARRGTTVLAVSHDPLLRAAADEVVEVK
HHHHHHCCCEEEEECCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
STKSSAPAKRRAGPVDPRLLRLSPATRRWVIIAGVLTALKTLATVAMGLLIGQMAAGII
CCCCCCCHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE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HHHHHHCCCEEEEECCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]