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The map label for this gene is ybdF [H]

Identifier: 62389962

GI number: 62389962

Start: 1122934

End: 1123278

Strand: Reverse

Name: ybdF [H]

Synonym: cg1221

Alternate gene names: 62389962

Gene position: 1123278-1122934 (Counterclockwise)

Preceding gene: 62389963

Following gene: 62389961

Centisome position: 34.22

GC content: 50.72

Gene sequence:

>345_bases
ATGGATCTGCACAAGGTAGCTGCAGCGCACGCGGCGACTCTTCCCCTGAGCACCAAAGAGTTTCCTTTCGGACCCGAGCA
CGAAGTGTACAAAGTGCGGGGCAAGGTATTTTTGCTGCTCACGATACTAAATGATGAGCCGATTATCACGCTGAAATCAG
ACCCCGAGATTGGCGCTTCACTACGCAGTGGCTTCCCCACCATCCAGGCTGGATATCACATGAACAAAGTGCACTGGCTG
AGCATTAGCGATGGTGAACGGATCACGAAAGACTTCATCGAAGGTCTCGTGGAAGAGTCCTATGAACTGGTAATTTCCAC
CTTGCCGAAGTATAAAAGGCCTTAA

Upstream 100 bases:

>100_bases
AAGAAGTAGAGCTCAGCGATGAAGATTTCGCGGCAGGCCACGACCTAGTAAAAACCAAATACGCCACCGAGGAGTGGACT
AAGCGAGTTCAATAGTTTCT

Downstream 100 bases:

>100_bases
CTTGGTTGCTTGCGGGTGGCAAGATGGGTGATATGAAAATTACCCGCCACATCCATGCATGCGTTGAGATCTCACAGGGA
AACGATCGAATCATTATTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MDLHKVAAAHAATLPLSTKEFPFGPEHEVYKVRGKVFLLLTILNDEPIITLKSDPEIGASLRSGFPTIQAGYHMNKVHWL
SISDGERITKDFIEGLVEESYELVISTLPKYKRP

Sequences:

>Translated_114_residues
MDLHKVAAAHAATLPLSTKEFPFGPEHEVYKVRGKVFLLLTILNDEPIITLKSDPEIGASLRSGFPTIQAGYHMNKVHWL
SISDGERITKDFIEGLVEESYELVISTLPKYKRP
>Mature_114_residues
MDLHKVAAAHAATLPLSTKEFPFGPEHEVYKVRGKVFLLLTILNDEPIITLKSDPEIGASLRSGFPTIQAGYHMNKVHWL
SISDGERITKDFIEGLVEESYELVISTLPKYKRP

Specific function: Unknown

COG id: COG2315

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786793, Length=108, Percent_Identity=41.6666666666667, Blast_Score=95, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007351 [H]

Pfam domain/function: PF04237 DUF419 [H]

EC number: NA

Molecular weight: Translated: 12804; Mature: 12804

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLHKVAAAHAATLPLSTKEFPFGPEHEVYKVRGKVFLLLTILNDEPIITLKSDPEIGAS
CCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCEEEEEEEEECCCCEEEECCCCCCCHH
LRSGFPTIQAGYHMNKVHWLSISDGERITKDFIEGLVEESYELVISTLPKYKRP
HHCCCCEEECCCEECEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDLHKVAAAHAATLPLSTKEFPFGPEHEVYKVRGKVFLLLTILNDEPIITLKSDPEIGAS
CCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCEEEEEEEEECCCCEEEECCCCCCCHH
LRSGFPTIQAGYHMNKVHWLSISDGERITKDFIEGLVEESYELVISTLPKYKRP
HHCCCCEEECCCEECEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]