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The map label for this gene is rarD [C]

Identifier: 62389026

GI number: 62389026

Start: 145516

End: 146340

Strand: Reverse

Name: rarD [C]

Synonym: cg0168

Alternate gene names: 62389026

Gene position: 146340-145516 (Counterclockwise)

Preceding gene: 62389029

Following gene: 62389019

Centisome position: 4.46

GC content: 49.09

Gene sequence:

>825_bases
TTGTTCGGAGCGATCTTTTTCATCTCTGGGGCGATTGAGGCAAAGGCGGAAACACTTGTTGCTTGGCGTGTCCTTCTAAC
AGCGGCATGCTATTTGCTTGCCCTTCTGCACCCTGCTGGTCGGAAGGTGTTTAAGGAATTTTGGGACACACTAAGGTCCC
AACCTCGTCAAATTCTGTACTTTATCTTCCTCGTTGTACTCATCACGCTTCAGCTGTGGCTGTTTTCTTGGTCGCCTAAG
AGTCATGCTTTAGATGCCTCACTTGGTTACCTGTTACTGCCCATTTTCCTAGTAATTGTGGGGCGGTTTTTCTTCGCTGA
TTACATCACCAGGCTGCAGTGGATTGCGGTGGGAATCGCGCTGATCGCAGTAACCTTGAAATTTGTCATTAGTGCGCAAT
TATCGTGGGTAACTTTTGCCATCGCTGCGGGTTATGCACTGTATTTTGCGCTTCGTAAATACTCGGGGCTGAACAACGCT
TTTGCTTACGGCGCAGAAGTTTTAGCGTTAAGTCCCCTGGCATTTTTCATGCTCGCCACTGTCGAGGATCCGCTGTCTAA
CGCCATGTTGTCAATGGTTATTCTGGCGGGCCTCGCTGGCGCATTAGCTATGGCGTTGTATCTAGCCGCCTCAACTCTGC
TTAGTATGCCGATGTTTGGCCTGCTCAGTTATGGTGAACCAATCTTGCTGTTTGTTGCAGCACTATTACTTGGTGAAACG
TTGAATCTCAGCGACGCCATTGTCTACTCACTACTGGCGTGCGCCCTGGCGTTACTGGGATTTGATGGGATACGAAGGTC
TCGAAAAAACCTCGAGACCGATTAA

Upstream 100 bases:

>100_bases
TCCAGACATATGCGAAGCTAATGAAGGAAACGAGGAGCTGATAGTGGCAACAAATCGTACATCTTCCGCTGGTGTCATCA
CGTCTGTTCTCGCATCCGCT

Downstream 100 bases:

>100_bases
CTTCTGCTCAACTTCCCACCAATTAAGACCGCTAAACCAATTCCATGATGCCTCGGAACAACACCACTGCGGCACCAGCT
GCTGCCAGGAGCGTAGCGAT

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MFGAIFFISGAIEAKAETLVAWRVLLTAACYLLALLHPAGRKVFKEFWDTLRSQPRQILYFIFLVVLITLQLWLFSWSPK
SHALDASLGYLLLPIFLVIVGRFFFADYITRLQWIAVGIALIAVTLKFVISAQLSWVTFAIAAGYALYFALRKYSGLNNA
FAYGAEVLALSPLAFFMLATVEDPLSNAMLSMVILAGLAGALAMALYLAASTLLSMPMFGLLSYGEPILLFVAALLLGET
LNLSDAIVYSLLACALALLGFDGIRRSRKNLETD

Sequences:

>Translated_274_residues
MFGAIFFISGAIEAKAETLVAWRVLLTAACYLLALLHPAGRKVFKEFWDTLRSQPRQILYFIFLVVLITLQLWLFSWSPK
SHALDASLGYLLLPIFLVIVGRFFFADYITRLQWIAVGIALIAVTLKFVISAQLSWVTFAIAAGYALYFALRKYSGLNNA
FAYGAEVLALSPLAFFMLATVEDPLSNAMLSMVILAGLAGALAMALYLAASTLLSMPMFGLLSYGEPILLFVAALLLGET
LNLSDAIVYSLLACALALLGFDGIRRSRKNLETD
>Mature_274_residues
MFGAIFFISGAIEAKAETLVAWRVLLTAACYLLALLHPAGRKVFKEFWDTLRSQPRQILYFIFLVVLITLQLWLFSWSPK
SHALDASLGYLLLPIFLVIVGRFFFADYITRLQWIAVGIALIAVTLKFVISAQLSWVTFAIAAGYALYFALRKYSGLNNA
FAYGAEVLALSPLAFFMLATVEDPLSNAMLSMVILAGLAGALAMALYLAASTLLSMPMFGLLSYGEPILLFVAALLLGET
LNLSDAIVYSLLACALALLGFDGIRRSRKNLETD

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eamA transporter family [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=231, Percent_Identity=26.4069264069264, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 30059; Mature: 30059

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGAIFFISGAIEAKAETLVAWRVLLTAACYLLALLHPAGRKVFKEFWDTLRSQPRQILY
CCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
FIFLVVLITLQLWLFSWSPKSHALDASLGYLLLPIFLVIVGRFFFADYITRLQWIAVGIA
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIAVTLKFVISAQLSWVTFAIAAGYALYFALRKYSGLNNAFAYGAEVLALSPLAFFMLAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
VEDPLSNAMLSMVILAGLAGALAMALYLAASTLLSMPMFGLLSYGEPILLFVAALLLGET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
LNLSDAIVYSLLACALALLGFDGIRRSRKNLETD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MFGAIFFISGAIEAKAETLVAWRVLLTAACYLLALLHPAGRKVFKEFWDTLRSQPRQILY
CCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
FIFLVVLITLQLWLFSWSPKSHALDASLGYLLLPIFLVIVGRFFFADYITRLQWIAVGIA
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIAVTLKFVISAQLSWVTFAIAAGYALYFALRKYSGLNNAFAYGAEVLALSPLAFFMLAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
VEDPLSNAMLSMVILAGLAGALAMALYLAASTLLSMPMFGLLSYGEPILLFVAALLLGET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
LNLSDAIVYSLLACALALLGFDGIRRSRKNLETD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]