Definition | Corynebacterium glutamicum ATCC 13032, complete genome. |
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Accession | NC_006958 |
Length | 3,282,708 |
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The map label for this gene is panD
Identifier: 62389029
GI number: 62389029
Start: 147571
End: 147981
Strand: Reverse
Name: panD
Synonym: cg0172
Alternate gene names: 62389029
Gene position: 147981-147571 (Counterclockwise)
Preceding gene: 62389031
Following gene: 62389026
Centisome position: 4.51
GC content: 53.28
Gene sequence:
>411_bases ATGCTGCGCACCATCCTCGGAAGTAAGATTCACCGAGCCACTGTCACTCAAGCTGATCTAGATTATGTTGGCTCTGTAAC CATCGACGCCGACCTGGTTCACGCCGCCGGATTGATCGAAGGCGAAAAAGTTGCCATCGTAGACATCACCAACGGCGCTC GTCTGGAAACTTATGTCATTGTGGGCGACGCCGGAACGGGCAATATTTGCATCAATGGTGCCGCTGCACACCTTATTAAT CCTGGCGATCTTGTGATCATCATGAGCTACCTTCAGGCAACTGATGCGGAAGCCAAGGCGTATGAGCCAAAGATTGTGCA CGTGGACGCCGACAACCGCATCGTTGCGCTCGGCAACGATCTTGCGGAAGCACTACCTGGATCCGGGCTTTTGACGTCGA GAAGCATTTAG
Upstream 100 bases:
>100_bases ACGCGGGGGTTGTTGCCGGATCGAAATATTCCTTTCCTTGTCATCTCACGCTATGATTTCTAAAACTTGCAGGACAACCC CCATAAGGACACCACAGGAC
Downstream 100 bases:
>100_bases CGTTTTAGCTCGCCAATATTGCTGCCGGCCTCGTTGAAAATGGTCATGGTGGCATCGGTGACGGTGGCGGTGTGCATCTG GGACAGCCAATCGTTGACGC
Product: aspartate alpha-decarboxylase
Products: NA
Alternate protein names: Aspartate alpha-decarboxylase
Number of amino acids: Translated: 136; Mature: 136
Protein sequence:
>136_residues MLRTILGSKIHRATVTQADLDYVGSVTIDADLVHAAGLIEGEKVAIVDITNGARLETYVIVGDAGTGNICINGAAAHLIN PGDLVIIMSYLQATDAEAKAYEPKIVHVDADNRIVALGNDLAEALPGSGLLTSRSI
Sequences:
>Translated_136_residues MLRTILGSKIHRATVTQADLDYVGSVTIDADLVHAAGLIEGEKVAIVDITNGARLETYVIVGDAGTGNICINGAAAHLIN PGDLVIIMSYLQATDAEAKAYEPKIVHVDADNRIVALGNDLAEALPGSGLLTSRSI >Mature_136_residues MLRTILGSKIHRATVTQADLDYVGSVTIDADLVHAAGLIEGEKVAIVDITNGARLETYVIVGDAGTGNICINGAAAHLIN PGDLVIIMSYLQATDAEAKAYEPKIVHVDADNRIVALGNDLAEALPGSGLLTSRSI
Specific function: Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
COG id: COG0853
COG function: function code H; Aspartate 1-decarboxylase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the panD family
Homologues:
Organism=Escherichia coli, GI1786323, Length=126, Percent_Identity=42.8571428571429, Blast_Score=112, Evalue=8e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): PAND_CORGB (A4QAD0)
Other databases:
- EMBL: AP009044 - RefSeq: YP_001137079.1 - ProteinModelPortal: A4QAD0 - SMR: A4QAD0 - STRING: A4QAD0 - GeneID: 4993400 - GenomeReviews: AP009044_GR - KEGG: cgt:cgR_0214 - eggNOG: COG0853 - HOGENOM: HBG302821 - OMA: LYSKIHR - ProtClustDB: PRK05449 - GO: GO:0005737 - GO: GO:0005488 - HAMAP: MF_00446 - InterPro: IPR009010 - InterPro: IPR003190 - Gene3D: G3DSA:2.40.40.20 - PANTHER: PTHR21012 - PIRSF: PIRSF006246 - ProDom: PD009294 - TIGRFAMs: TIGR00223
Pfam domain/function: PF02261 Asp_decarbox; SSF50692 Asp_decarb_fold
EC number: =4.1.1.11
Molecular weight: Translated: 14147; Mature: 14147
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: NA
Important sites: ACT_SITE 25-25 ACT_SITE 58-58 BINDING 57-57
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRTILGSKIHRATVTQADLDYVGSVTIDADLVHAAGLIEGEKVAIVDITNGARLETYVI CCCCHHCCCCCEEEECCCCCCCEEEEEECHHHHEECCCCCCCEEEEEEECCCCEEEEEEE VGDAGTGNICINGAAAHLINPGDLVIIMSYLQATDAEAKAYEPKIVHVDADNRIVALGND EECCCCCCEEEECCEEEEECCCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCEEEEECCC LAEALPGSGLLTSRSI HHHHCCCCCCEEECCC >Mature Secondary Structure MLRTILGSKIHRATVTQADLDYVGSVTIDADLVHAAGLIEGEKVAIVDITNGARLETYVI CCCCHHCCCCCEEEECCCCCCCEEEEEECHHHHEECCCCCCCEEEEEEECCCCEEEEEEE VGDAGTGNICINGAAAHLINPGDLVIIMSYLQATDAEAKAYEPKIVHVDADNRIVALGND EECCCCCCEEEECCEEEEECCCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCEEEEECCC LAEALPGSGLLTSRSI HHHHCCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA