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The map label for this gene is ripA [H]

Identifier: 62388931

GI number: 62388931

Start: 36244

End: 37242

Strand: Reverse

Name: ripA [H]

Synonym: cg0051

Alternate gene names: 62388931

Gene position: 37242-36244 (Counterclockwise)

Preceding gene: 62388935

Following gene: 62388928

Centisome position: 1.13

GC content: 50.35

Gene sequence:

>999_bases
GTGTCCGGGGACGGAACTGCACAGAAAGCTTTGCAACCCGAATCGTCTGGTTTCTTTTCACAGCGCCGTTTTCTCGATGA
AACAGGGCTAAACATCAGCACCTGGAGAACACGCACCCGGTTAAGCCTTGCAGTTGCCTATCTTTCCGATGGCGACAGCG
CAGAATGGGCAGCTCATCACGTTGGTTTTTCTGGAGCAAGCAACCTCTCCAAAGCATTTCGCACTCATATGGGGATCTCA
CCCAATCAGATTCTTACACTTCCAGAACCGCAACATCTTGATCCACCACTGCCCCAACTCGCATCTTTAGAGATTCCAGC
AAATGAAACATGGTCTCGGATCAATGGATCTCACATCATGGTGTGGGCTTTTCAAGGAACATCCACCGTTCGAGTAGCTG
ATAGAGAACTCACTGTTCATCAAGGTGAAGGGTTAATTCTTCCAGCTGGAATGCGCCTGGATCTTCACACTCCTGCGGGC
GGACTCATGTTGCCGTTGGGCTACCAAGTTCCAGATTCCCATTCAATCAGTGCCCAACATGTGGACATCATTCAGTTTGA
TTGCTCTATTCAGCAGCTTTTGCAATGCACGATTTCTGCCTACACTCCTTTTCACCCGCACAAAGCGGCCCCGGATCAGT
GCTTCTCCCTACCTTTTCCAAAATGCTCCACGAAAAACACGCCAACCAAAAATCACAATGATGAATTAATTTCTTTGGCA
GTTGATCTTGCAGTCTCCCGAGAAACTAATGTTTCTGCTATTCGCGGCGGAATTGCGGAAGAGTTTGCACACATGACTGG
CATTGCGGTGCAGCGCTGGGGACTTCTGCGAAGAATGACTTTGGCGCGCATTCAATTAAGCAAAGGGCTAAGCCCGGGGG
TAGTCGCACGGAACCTCGGATACTCACACTTACCTGCTTTCAACCGTGCTTTCACCGCCACTCATGGTTGCACACCGATG
CAGTACCAAGCTGACTGTGCGCGCATCCCTACCCCCTGA

Upstream 100 bases:

>100_bases
ACGACCGCCGACCACGCCTGCGATGCAGTGATGGAACCAACAGTCAGACTCAAATGAATAAGAATCACCACCAACGTAAC
CGCGATGAGCACTACCATCA

Downstream 100 bases:

>100_bases
GTTATCCACAGGGGTTCGGAGTTATACACATCGATCTGTGGACAAGTGTGTGTTAATCGCTTTTCCTCAAGTTATCCACA
GGCTGTGGAACAAGTTGTGA

Product: transcription regulator protein, AraC typ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MSGDGTAQKALQPESSGFFSQRRFLDETGLNISTWRTRTRLSLAVAYLSDGDSAEWAAHHVGFSGASNLSKAFRTHMGIS
PNQILTLPEPQHLDPPLPQLASLEIPANETWSRINGSHIMVWAFQGTSTVRVADRELTVHQGEGLILPAGMRLDLHTPAG
GLMLPLGYQVPDSHSISAQHVDIIQFDCSIQQLLQCTISAYTPFHPHKAAPDQCFSLPFPKCSTKNTPTKNHNDELISLA
VDLAVSRETNVSAIRGGIAEEFAHMTGIAVQRWGLLRRMTLARIQLSKGLSPGVVARNLGYSHLPAFNRAFTATHGCTPM
QYQADCARIPTP

Sequences:

>Translated_332_residues
MSGDGTAQKALQPESSGFFSQRRFLDETGLNISTWRTRTRLSLAVAYLSDGDSAEWAAHHVGFSGASNLSKAFRTHMGIS
PNQILTLPEPQHLDPPLPQLASLEIPANETWSRINGSHIMVWAFQGTSTVRVADRELTVHQGEGLILPAGMRLDLHTPAG
GLMLPLGYQVPDSHSISAQHVDIIQFDCSIQQLLQCTISAYTPFHPHKAAPDQCFSLPFPKCSTKNTPTKNHNDELISLA
VDLAVSRETNVSAIRGGIAEEFAHMTGIAVQRWGLLRRMTLARIQLSKGLSPGVVARNLGYSHLPAFNRAFTATHGCTPM
QYQADCARIPTP
>Mature_331_residues
SGDGTAQKALQPESSGFFSQRRFLDETGLNISTWRTRTRLSLAVAYLSDGDSAEWAAHHVGFSGASNLSKAFRTHMGISP
NQILTLPEPQHLDPPLPQLASLEIPANETWSRINGSHIMVWAFQGTSTVRVADRELTVHQGEGLILPAGMRLDLHTPAGG
LMLPLGYQVPDSHSISAQHVDIIQFDCSIQQLLQCTISAYTPFHPHKAAPDQCFSLPFPKCSTKNTPTKNHNDELISLAV
DLAVSRETNVSAIRGGIAEEFAHMTGIAVQRWGLLRRMTLARIQLSKGLSPGVVARNLGYSHLPAFNRAFTATHGCTPMQ
YQADCARIPTP

Specific function: Under iron limitation, represses the acn (aconitase), catA (catechol 1,2 dioxygenase), leuCD (isopropylmalate dehydratase), narKGHJI (nitrite/nitrate transporter and nitrate reductase), sdhCAB (succinate dehydrogenase), pta (phosphotransacetylase) and kat

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36221; Mature: 36089

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGDGTAQKALQPESSGFFSQRRFLDETGLNISTWRTRTRLSLAVAYLSDGDSAEWAAHH
CCCCCCHHHHCCCCCCCHHHHHHHHHHCCCEEEEHHHHHEEEEEEEEECCCCCCHHHHHH
VGFSGASNLSKAFRTHMGISPNQILTLPEPQHLDPPLPQLASLEIPANETWSRINGSHIM
CCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHEEECCCCHHHHHCCCCEEE
VWAFQGTSTVRVADRELTVHQGEGLILPAGMRLDLHTPAGGLMLPLGYQVPDSHSISAQH
EEEECCCCEEEEECCEEEEECCCCEEEECCCEEEEECCCCCEEEECCCCCCCCCCCCCCE
VDIIQFDCSIQQLLQCTISAYTPFHPHKAAPDQCFSLPFPKCSTKNTPTKNHNDELISLA
EEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEEEEE
VDLAVSRETNVSAIRGGIAEEFAHMTGIAVQRWGLLRRMTLARIQLSKGLSPGVVARNLG
EHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCC
YSHLPAFNRAFTATHGCTPMQYQADCARIPTP
CHHCCCCCHHEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SGDGTAQKALQPESSGFFSQRRFLDETGLNISTWRTRTRLSLAVAYLSDGDSAEWAAHH
CCCCCHHHHCCCCCCCHHHHHHHHHHCCCEEEEHHHHHEEEEEEEEECCCCCCHHHHHH
VGFSGASNLSKAFRTHMGISPNQILTLPEPQHLDPPLPQLASLEIPANETWSRINGSHIM
CCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHEEECCCCHHHHHCCCCEEE
VWAFQGTSTVRVADRELTVHQGEGLILPAGMRLDLHTPAGGLMLPLGYQVPDSHSISAQH
EEEECCCCEEEEECCEEEEECCCCEEEECCCEEEEECCCCCEEEECCCCCCCCCCCCCCE
VDIIQFDCSIQQLLQCTISAYTPFHPHKAAPDQCFSLPFPKCSTKNTPTKNHNDELISLA
EEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEEEEE
VDLAVSRETNVSAIRGGIAEEFAHMTGIAVQRWGLLRRMTLARIQLSKGLSPGVVARNLG
EHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCC
YSHLPAFNRAFTATHGCTPMQYQADCARIPTP
CHHCCCCCHHEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14602910 [H]