Click here to switch to the map view.

The map label for this gene is adiY [C]

Identifier: 59713739

GI number: 59713739

Start: 639795

End: 640595

Strand: Reverse

Name: adiY [C]

Synonym: VF_A0556

Alternate gene names: 59713739

Gene position: 640595-639795 (Counterclockwise)

Preceding gene: 59713741

Following gene: 59713738

Centisome position: 48.15

GC content: 36.45

Gene sequence:

>801_bases
ATGATGTCTCCAGTCCAGTTACACGAGTTTAATACTCATACCAGAAGAAAGTCAGATCGCTACCCTGTTGAGCGTAATGG
TATTTTCATTGTAACTTCTGGTCAATTTCATTACCGAGATAGAACGGGTGACGATATTACCCTTAATGCTGGTGATTTTT
TGTTATATAGCTCTGGCGATATTTCAAAAATAAAAATGACAAACGATAACAACAATTTTAAAGCACAATCTGTTGTTATC
GACGTTGCTTTATTTCAAAAATTTTTGTCCTACAGTAATGCCCCTGCTCATGCTCCATGTAATTCGGATACCTTCATCTT
TACTGCTAATGATACGTCAGTAGTCAAACTACTCGAATTGCTAAAGGAACAATTAGCTAATAACGACAACAACGACACTC
TTGAGTTTTTGACCTTAGCGCTGCTTAGTGAAATGGTAAATAAACAACCGTGTCTGATTCCTTTTATCCAAAAAATATCG
GTATTAACGACTTCTCAGCAACTGATAAGATACGTAGAAGAGCATATATCAGCAGATTTAACCATTGATATGGTTGCTCC
CAAATTAGGGATGTCTGCATCAACATTAAAACGTAAACTTCAATCAGATCAACTTTCTTTTGCTCATTTGGTTAAAGTAA
AACGCATTAATTATGCGGCAACACAACTAAGACTGACTCGAAAAACCATCACTGAAATCGCTTATGACACAGGTTTTAAA
ACAGCGGCACACTTTAGTACGAGTTTTAAGTCCGTAAAAGGGATCACCCCAAAAGAATTTCGTGATTCACTTCAAGGTTA
A

Upstream 100 bases:

>100_bases
AGTCTTAATTTTCTATTCATTTTTCAAGACTTCAAACTAATACTCTTGATTTTTCAATAAGTAAGTTTACACTAATTTTC
AATGATAATAGAGGGAAATC

Downstream 100 bases:

>100_bases
TTTGTCACAATGGTGTAACACTTCCCGACTATGATGCTTTTTTTTCATTATGGATTTAGGTCATGTTCAAAGCGTTTAGT
TACACCACCATATTTACAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MMSPVQLHEFNTHTRRKSDRYPVERNGIFIVTSGQFHYRDRTGDDITLNAGDFLLYSSGDISKIKMTNDNNNFKAQSVVI
DVALFQKFLSYSNAPAHAPCNSDTFIFTANDTSVVKLLELLKEQLANNDNNDTLEFLTLALLSEMVNKQPCLIPFIQKIS
VLTTSQQLIRYVEEHISADLTIDMVAPKLGMSASTLKRKLQSDQLSFAHLVKVKRINYAATQLRLTRKTITEIAYDTGFK
TAAHFSTSFKSVKGITPKEFRDSLQG

Sequences:

>Translated_266_residues
MMSPVQLHEFNTHTRRKSDRYPVERNGIFIVTSGQFHYRDRTGDDITLNAGDFLLYSSGDISKIKMTNDNNNFKAQSVVI
DVALFQKFLSYSNAPAHAPCNSDTFIFTANDTSVVKLLELLKEQLANNDNNDTLEFLTLALLSEMVNKQPCLIPFIQKIS
VLTTSQQLIRYVEEHISADLTIDMVAPKLGMSASTLKRKLQSDQLSFAHLVKVKRINYAATQLRLTRKTITEIAYDTGFK
TAAHFSTSFKSVKGITPKEFRDSLQG
>Mature_266_residues
MMSPVQLHEFNTHTRRKSDRYPVERNGIFIVTSGQFHYRDRTGDDITLNAGDFLLYSSGDISKIKMTNDNNNFKAQSVVI
DVALFQKFLSYSNAPAHAPCNSDTFIFTANDTSVVKLLELLKEQLANNDNNDTLEFLTLALLSEMVNKQPCLIPFIQKIS
VLTTSQQLIRYVEEHISADLTIDMVAPKLGMSASTLKRKLQSDQLSFAHLVKVKRINYAATQLRLTRKTITEIAYDTGFK
TAAHFSTSFKSVKGITPKEFRDSLQG

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790557, Length=98, Percent_Identity=29.5918367346939, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 29995; Mature: 29995

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSPVQLHEFNTHTRRKSDRYPVERNGIFIVTSGQFHYRDRTGDDITLNAGDFLLYSSGD
CCCCCEECCCCCHHCCCCCCCCCCCCCEEEEECCEEEECCCCCCEEEEECCCEEEECCCC
ISKIKMTNDNNNFKAQSVVIDVALFQKFLSYSNAPAHAPCNSDTFIFTANDTSVVKLLEL
CEEEEEECCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHHHHHH
LKEQLANNDNNDTLEFLTLALLSEMVNKQPCLIPFIQKISVLTTSQQLIRYVEEHISADL
HHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
TIDMVAPKLGMSASTLKRKLQSDQLSFAHLVKVKRINYAATQLRLTRKTITEIAYDTGFK
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TAAHFSTSFKSVKGITPKEFRDSLQG
HHHHHHHHHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure
MMSPVQLHEFNTHTRRKSDRYPVERNGIFIVTSGQFHYRDRTGDDITLNAGDFLLYSSGD
CCCCCEECCCCCHHCCCCCCCCCCCCCEEEEECCEEEECCCCCCEEEEECCCEEEECCCC
ISKIKMTNDNNNFKAQSVVIDVALFQKFLSYSNAPAHAPCNSDTFIFTANDTSVVKLLEL
CEEEEEECCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHHHHHH
LKEQLANNDNNDTLEFLTLALLSEMVNKQPCLIPFIQKISVLTTSQQLIRYVEEHISADL
HHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
TIDMVAPKLGMSASTLKRKLQSDQLSFAHLVKVKRINYAATQLRLTRKTITEIAYDTGFK
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TAAHFSTSFKSVKGITPKEFRDSLQG
HHHHHHHHHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12044378 [H]