| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is rnfC [H]
Identifier: 59711540
GI number: 59711540
Start: 1026708
End: 1029191
Strand: Reverse
Name: rnfC [H]
Synonym: VF_0933
Alternate gene names: 59711540
Gene position: 1029191-1026708 (Counterclockwise)
Preceding gene: 59711541
Following gene: 59711539
Centisome position: 35.52
GC content: 44.4
Gene sequence:
>2484_bases ATGTTGTCCATTATCGAACAAATTAAACAAGGCCAACTGTGGGACTTTCACGGTGGTATTCATCCTGAAGAAAATAAAAC AATCTCTAATCAGGCTGCAATTCAACAAGCGGGGATCCCTTCTCAACTTGTTCTTCCTTTAAAACAGCACATTGGTGGAA AAGGTGACATTCTTGTCTCTGTTGGTGATGTCGTACTAAAAGGCCAACCTCTAACACAGGGCAATATTGCTATGTGTGTT CCTGTTCACGCACCAACATCAGGAAGAATTACCGCCATTGAGCCTCGCACCGTAGCTCATCCATCAGGATTAACAGATCT GTGTATCGTAATCGAATCGGATGGCGAAGATCGTTGGGTTGAAGATCGTACACCAATTGATGACTTTTCATCAGTAGATC CCATCGATCTTATCGAGAGAATCCGTCAATCTGGTATATCAGGAATGGGTGGTGCTGGTTTCCCTACTAGCCGTAAGATT CAAAGTGGTATTGGCAAAGCTGAAATGCTCATTATCAACGCTGCTGAATGTGAACCCTACATCACTGCAGATGATCGTTT AATGCGAGAGCATGCTGAAGAGATCATTGATGGTATTAAGATCCTACAACACATTCTGACACCAAAAGTATGTATCATTG CCATTGAAGATAACAAACCAGAAGCCGTAAAAGCACTTAACCAAGCGGTTACTGACCATGACAATATCATTATTCGAGTC ATACCAACCAAATATCCATCTGGTGGTTCTCGTCAACTGACAAAAATAATTACAGGGCAAGAAGTACCTGCAAATGGCCG TTCAACAGATATTGGGGTCATTGTTCAAAACGTCGGAACGGTATTTGCCATAAAGCGCGCTATTTGCGATGCCGAACCTC TTATTGAGCGAATCGTCACGTTAACAGGTAACAGCATGTCAACACCAGGTAACCTGTGGGTTCGCCTAGGTACTTGTATT GATTACCTTATGGAATTAGTTGGCTATAAAGCTGATAAGAAACACCCACGAATCATCATGGGCGGTTCATTAATGGGCTT TACTTTACCCCATCAGCAAGTTCCAATTACTAAAATTACCAACTGTATTATCACACCAGATAAAAAAGAACTGCCTCTGT ACAATCATGAAATGGCTTGTATTCGATGCAGTAGCTGTGCTGATGCCTGCCCAACATCGTTACTTCCTCAGCAGCTATAC TGGTACTCAAAATCAGAAGATTATGACAAATGTAATGAGTATAACCTTAACGATTGTATTGAGTGTGGTGCCTGTGCTTA TGTCTGTCCAAGTGAAATACCGCTAGTTCAATATTATCGCCAAGCCAAATCAGAAATTTATTCTCGTAAGCAAGATGCAT TAGCTGCAGAACGAGCAAAATTACGTTTTGAAGAAAAAAATGCACGTTTAGAACGCGATAAACTTGAACGTGAAAATAAA TTTAAACAAGCCGCTGAAAACCGTCGCAAAGAGATGAAGACAGAGAATAAAGGTGGTGATGATGCAATCGCTGCAGCTAT TGCTCGTGTCAAAGCACAAAAAGCCGCTCAAGAATCTGGCGTAGCTGCACCAAAACCGGCTGTTGCTGCTGCAATTGCTC GTGCAAAAGCAAAACAAGCAGAGGCAGCAAAATCGGAGACTTCAGTACCAGATAACTCTGAAATGGCTAAACTACGTGAA GAGCGTAAGCAGCAAGCAAGAGAAAGAAAAGCAAAACTTGCGGAAGAAACCACAGCAACTGATTCAGACAAATCAGAGAA AAAAGATGCCGTGGCTGCCGCTATTGCTCGTGCAAAAGCACGCAAAGCTGCGCAAGCTGAAGAGAAAACGGAAACGCCAG TGGCCTCTGAAGAGAAGAATCAAAACACTGAAGGATCTGCTGATCCGAAAAAAGCAGCCGTCGCCGCCGCTATTGCTCGT GCAAAAGCACGCAAAGCAGCACAGGCTGAAGAGAAAACGGAAACGCCAGTGACCTCTGAAGAGAAGAATCAAAACACTGA AGGATCTGCTGATCCGAAAAAAGCAGCCGTCGCTGCCGCTATCGCTCGTGCAAAAGCACGCAAAGCTGCGCAAGCTGAAG AGAAAACGGAAACGCCAGTGGCCTCTGAAGAGAAGAATCAAAACACTGAAGGATCTGCTGATCCGAAAAAAGCAGCCGTC GCCGCCGCTATTGCTCGTGCAAAAGCACGCAAAGCAGCACAGGCTGAAGAGAAAACGGAAACGCCAGTGACCTCTGAAGA GAAGAATCAAAACACTGAAGGATCTGCTGATCCGAAAAAAGCAGCCGTCGCCGCCGCTATTGCTCGTGCAAAAGCACGCA AAGCAACACAGGCTGAAGAGAAAACGGAAACGCCAGTGACCTCTGAAGAGAAGAATCAGAACACTGAAGAATCTGCTGAT CCAAAAAAAGCAGCCGTCGCTGCCGCTATTGCTCGTGCAAAAGCACGTAAAGCAGCACAAGAAAATAACAAGAAGGAAGA GTAA
Upstream 100 bases:
>100_bases TGTAAAAACAACACCTGATAATTGGAAATGGGATTTAAACACTATCCCTGTTGTAAATATTTCTACAGACCAACCTTCTA AATCATCGGAGCTGTAATAC
Downstream 100 bases:
>100_bases CAGTGGCCTTTTTTATCACTAGCTCACCCCACGCTCATAGCAAAAAGAGCACAAAACACATTATGAAGATGGTTGCTCTT GCAACTATTCCTGGCTTATT
Product: electron transport complex protein RnfC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 827; Mature: 827
Protein sequence:
>827_residues MLSIIEQIKQGQLWDFHGGIHPEENKTISNQAAIQQAGIPSQLVLPLKQHIGGKGDILVSVGDVVLKGQPLTQGNIAMCV PVHAPTSGRITAIEPRTVAHPSGLTDLCIVIESDGEDRWVEDRTPIDDFSSVDPIDLIERIRQSGISGMGGAGFPTSRKI QSGIGKAEMLIINAAECEPYITADDRLMREHAEEIIDGIKILQHILTPKVCIIAIEDNKPEAVKALNQAVTDHDNIIIRV IPTKYPSGGSRQLTKIITGQEVPANGRSTDIGVIVQNVGTVFAIKRAICDAEPLIERIVTLTGNSMSTPGNLWVRLGTCI DYLMELVGYKADKKHPRIIMGGSLMGFTLPHQQVPITKITNCIITPDKKELPLYNHEMACIRCSSCADACPTSLLPQQLY WYSKSEDYDKCNEYNLNDCIECGACAYVCPSEIPLVQYYRQAKSEIYSRKQDALAAERAKLRFEEKNARLERDKLERENK FKQAAENRRKEMKTENKGGDDAIAAAIARVKAQKAAQESGVAAPKPAVAAAIARAKAKQAEAAKSETSVPDNSEMAKLRE ERKQQARERKAKLAEETTATDSDKSEKKDAVAAAIARAKARKAAQAEEKTETPVASEEKNQNTEGSADPKKAAVAAAIAR AKARKAAQAEEKTETPVTSEEKNQNTEGSADPKKAAVAAAIARAKARKAAQAEEKTETPVASEEKNQNTEGSADPKKAAV AAAIARAKARKAAQAEEKTETPVTSEEKNQNTEGSADPKKAAVAAAIARAKARKATQAEEKTETPVTSEEKNQNTEESAD PKKAAVAAAIARAKARKAAQENNKKEE
Sequences:
>Translated_827_residues MLSIIEQIKQGQLWDFHGGIHPEENKTISNQAAIQQAGIPSQLVLPLKQHIGGKGDILVSVGDVVLKGQPLTQGNIAMCV PVHAPTSGRITAIEPRTVAHPSGLTDLCIVIESDGEDRWVEDRTPIDDFSSVDPIDLIERIRQSGISGMGGAGFPTSRKI QSGIGKAEMLIINAAECEPYITADDRLMREHAEEIIDGIKILQHILTPKVCIIAIEDNKPEAVKALNQAVTDHDNIIIRV IPTKYPSGGSRQLTKIITGQEVPANGRSTDIGVIVQNVGTVFAIKRAICDAEPLIERIVTLTGNSMSTPGNLWVRLGTCI DYLMELVGYKADKKHPRIIMGGSLMGFTLPHQQVPITKITNCIITPDKKELPLYNHEMACIRCSSCADACPTSLLPQQLY WYSKSEDYDKCNEYNLNDCIECGACAYVCPSEIPLVQYYRQAKSEIYSRKQDALAAERAKLRFEEKNARLERDKLERENK FKQAAENRRKEMKTENKGGDDAIAAAIARVKAQKAAQESGVAAPKPAVAAAIARAKAKQAEAAKSETSVPDNSEMAKLRE ERKQQARERKAKLAEETTATDSDKSEKKDAVAAAIARAKARKAAQAEEKTETPVASEEKNQNTEGSADPKKAAVAAAIAR AKARKAAQAEEKTETPVTSEEKNQNTEGSADPKKAAVAAAIARAKARKAAQAEEKTETPVASEEKNQNTEGSADPKKAAV AAAIARAKARKAAQAEEKTETPVTSEEKNQNTEGSADPKKAAVAAAIARAKARKATQAEEKTETPVTSEEKNQNTEESAD PKKAAVAAAIARAKARKAAQENNKKEE >Mature_827_residues MLSIIEQIKQGQLWDFHGGIHPEENKTISNQAAIQQAGIPSQLVLPLKQHIGGKGDILVSVGDVVLKGQPLTQGNIAMCV PVHAPTSGRITAIEPRTVAHPSGLTDLCIVIESDGEDRWVEDRTPIDDFSSVDPIDLIERIRQSGISGMGGAGFPTSRKI QSGIGKAEMLIINAAECEPYITADDRLMREHAEEIIDGIKILQHILTPKVCIIAIEDNKPEAVKALNQAVTDHDNIIIRV IPTKYPSGGSRQLTKIITGQEVPANGRSTDIGVIVQNVGTVFAIKRAICDAEPLIERIVTLTGNSMSTPGNLWVRLGTCI DYLMELVGYKADKKHPRIIMGGSLMGFTLPHQQVPITKITNCIITPDKKELPLYNHEMACIRCSSCADACPTSLLPQQLY WYSKSEDYDKCNEYNLNDCIECGACAYVCPSEIPLVQYYRQAKSEIYSRKQDALAAERAKLRFEEKNARLERDKLERENK FKQAAENRRKEMKTENKGGDDAIAAAIARVKAQKAAQESGVAAPKPAVAAAIARAKAKQAEAAKSETSVPDNSEMAKLRE ERKQQARERKAKLAEETTATDSDKSEKKDAVAAAIARAKARKAAQAEEKTETPVASEEKNQNTEGSADPKKAAVAAAIAR AKARKAAQAEEKTETPVTSEEKNQNTEGSADPKKAAVAAAIARAKARKAAQAEEKTETPVASEEKNQNTEGSADPKKAAV AAAIARAKARKAAQAEEKTETPVTSEEKNQNTEGSADPKKAAVAAAIARAKARKATQAEEKTETPVTSEEKNQNTEESAD PKKAAVAAAIARAKARKAAQENNKKEE
Specific function: May be part of a membrane complex involved in electron transport [H]
COG id: COG4656
COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]
Homologues:
Organism=Escherichia coli, GI1787916, Length=807, Percent_Identity=48.0793060718711, Blast_Score=580, Evalue=1e-166,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR010208 - InterPro: IPR012285 - InterPro: IPR009051 - InterPro: IPR011538 - InterPro: IPR019554 [H]
Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]
EC number: NA
Molecular weight: Translated: 89406; Mature: 89406
Theoretical pI: Translated: 8.01; Mature: 8.01
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSIIEQIKQGQLWDFHGGIHPEENKTISNQAAIQQAGIPSQLVLPLKQHIGGKGDILVS CCHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEE VGDVVLKGQPLTQGNIAMCVPVHAPTSGRITAIEPRTVAHPSGLTDLCIVIESDGEDRWV ECCEEECCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCC EDRTPIDDFSSVDPIDLIERIRQSGISGMGGAGFPTSRKIQSGIGKAEMLIINAAECEPY CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCE ITADDRLMREHAEEIIDGIKILQHILTPKVCIIAIEDNKPEAVKALNQAVTDHDNIIIRV ECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEE IPTKYPSGGSRQLTKIITGQEVPANGRSTDIGVIVQNVGTVFAIKRAICDAEPLIERIVT ECCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH LTGNSMSTPGNLWVRLGTCIDYLMELVGYKADKKHPRIIMGGSLMGFTLPHQQVPITKIT HCCCCCCCCHHHHEEHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEECCCCCCCCHHHHH NCIITPDKKELPLYNHEMACIRCSSCADACPTSLLPQQLYWYSKSEDYDKCNEYNLNDCI HEEECCCCCCCCCCCCCHHEEEEHHHHHHCCHHHCHHHHHHCCCCCCHHHCCCCCCHHHH ECGACAYVCPSEIPLVQYYRQAKSEIYSRKQDALAAERAKLRFEEKNARLERDKLERENK HHCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FKQAAENRRKEMKTENKGGDDAIAAAIARVKAQKAAQESGVAAPKPAVAAAIARAKAKQA HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH EAAKSETSVPDNSEMAKLREERKQQARERKAKLAEETTATDSDKSEKKDAVAAAIARAKA HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH RKAAQAEEKTETPVASEEKNQNTEGSADPKKAAVAAAIARAKARKAAQAEEKTETPVTSE HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC EKNQNTEGSADPKKAAVAAAIARAKARKAAQAEEKTETPVASEEKNQNTEGSADPKKAAV CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH AAAIARAKARKAAQAEEKTETPVTSEEKNQNTEGSADPKKAAVAAAIARAKARKATQAEE HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH KTETPVTSEEKNQNTEESADPKKAAVAAAIARAKARKAAQENNKKEE HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MLSIIEQIKQGQLWDFHGGIHPEENKTISNQAAIQQAGIPSQLVLPLKQHIGGKGDILVS CCHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEE VGDVVLKGQPLTQGNIAMCVPVHAPTSGRITAIEPRTVAHPSGLTDLCIVIESDGEDRWV ECCEEECCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCC EDRTPIDDFSSVDPIDLIERIRQSGISGMGGAGFPTSRKIQSGIGKAEMLIINAAECEPY CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCE ITADDRLMREHAEEIIDGIKILQHILTPKVCIIAIEDNKPEAVKALNQAVTDHDNIIIRV ECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEE IPTKYPSGGSRQLTKIITGQEVPANGRSTDIGVIVQNVGTVFAIKRAICDAEPLIERIVT ECCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH LTGNSMSTPGNLWVRLGTCIDYLMELVGYKADKKHPRIIMGGSLMGFTLPHQQVPITKIT HCCCCCCCCHHHHEEHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEECCCCCCCCHHHHH NCIITPDKKELPLYNHEMACIRCSSCADACPTSLLPQQLYWYSKSEDYDKCNEYNLNDCI HEEECCCCCCCCCCCCCHHEEEEHHHHHHCCHHHCHHHHHHCCCCCCHHHCCCCCCHHHH ECGACAYVCPSEIPLVQYYRQAKSEIYSRKQDALAAERAKLRFEEKNARLERDKLERENK HHCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FKQAAENRRKEMKTENKGGDDAIAAAIARVKAQKAAQESGVAAPKPAVAAAIARAKAKQA HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH EAAKSETSVPDNSEMAKLREERKQQARERKAKLAEETTATDSDKSEKKDAVAAAIARAKA HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH RKAAQAEEKTETPVASEEKNQNTEGSADPKKAAVAAAIARAKARKAAQAEEKTETPVTSE HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC EKNQNTEGSADPKKAAVAAAIARAKARKAAQAEEKTETPVASEEKNQNTEGSADPKKAAV CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH AAAIARAKARKAAQAEEKTETPVTSEEKNQNTEGSADPKKAAVAAAIARAKARKATQAEE HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH KTETPVTSEEKNQNTEESADPKKAAVAAAIARAKARKAAQENNKKEE HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: 4Fe-4S clusters [C]
Metal ions: Iron-Sulfur [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]