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The map label for this gene is rnfB [H]

Identifier: 59711541

GI number: 59711541

Start: 1029195

End: 1029779

Strand: Reverse

Name: rnfB [H]

Synonym: VF_0934

Alternate gene names: 59711541

Gene position: 1029779-1029195 (Counterclockwise)

Preceding gene: 59711542

Following gene: 59711540

Centisome position: 35.54

GC content: 40.51

Gene sequence:

>585_bases
ATGAGTTCAATCTTAATTGCTGTTATAGCTATTGCTGCTCTTGCCCTAGTATTTGGCTTAATACTGGGGTTTGCATCAAT
TAAATTTAAAGTTGAGTCCGACCCTATTGTCGAACAAATCGATGCAATTCTTCCTCAGACGCAATGTGGTCAATGTGGTT
ACCCTGGCTGTAAGCCCTACGCTGAAGCTATCGCAAATGGCGATATGATAAATAAATGCCCTCCAGGTGGTCAGGCAACG
ATCGAAAAACTTGCAGACCTAATGGGCGTTGATGTTCCTAGCTCTGCTCACGATGAAGAAAAAAGCATTAAAAAAGTCGC
TTTTATTCATGAAGATATGTGTATTGGATGTACTAAATGTATTCAGGCTTGTCCTGTTGATGCCATTGTTGGCGGAACAA
AAGCCTTACATACCGTTATTGAATCGGAATGTACCGGATGTGATTTATGTGTCGCTCCATGTCCAACGGACTGTATTGAG
ATGATCCCTGTAAAAACAACACCTGATAATTGGAAATGGGATTTAAACACTATCCCTGTTGTAAATATTTCTACAGACCA
ACCTTCTAAATCATCGGAGCTGTAA

Upstream 100 bases:

>100_bases
ATGTACCTTTACCTTTTAAAGGTGCTTCTATTGCGATGATCACTGCAGGTTTAATGTCTTTAGCCTTTATGGGCTTTACT
GGTTTAGTGAAATTATAAAC

Downstream 100 bases:

>100_bases
TACATGTTGTCCATTATCGAACAAATTAAACAAGGCCAACTGTGGGACTTTCACGGTGGTATTCATCCTGAAGAAAATAA
AACAATCTCTAATCAGGCTG

Product: electron transport complex protein RnfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MSSILIAVIAIAALALVFGLILGFASIKFKVESDPIVEQIDAILPQTQCGQCGYPGCKPYAEAIANGDMINKCPPGGQAT
IEKLADLMGVDVPSSAHDEEKSIKKVAFIHEDMCIGCTKCIQACPVDAIVGGTKALHTVIESECTGCDLCVAPCPTDCIE
MIPVKTTPDNWKWDLNTIPVVNISTDQPSKSSEL

Sequences:

>Translated_194_residues
MSSILIAVIAIAALALVFGLILGFASIKFKVESDPIVEQIDAILPQTQCGQCGYPGCKPYAEAIANGDMINKCPPGGQAT
IEKLADLMGVDVPSSAHDEEKSIKKVAFIHEDMCIGCTKCIQACPVDAIVGGTKALHTVIESECTGCDLCVAPCPTDCIE
MIPVKTTPDNWKWDLNTIPVVNISTDQPSKSSEL
>Mature_193_residues
SSILIAVIAIAALALVFGLILGFASIKFKVESDPIVEQIDAILPQTQCGQCGYPGCKPYAEAIANGDMINKCPPGGQATI
EKLADLMGVDVPSSAHDEEKSIKKVAFIHEDMCIGCTKCIQACPVDAIVGGTKALHTVIESECTGCDLCVAPCPTDCIEM
IPVKTTPDNWKWDLNTIPVVNISTDQPSKSSEL

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=191, Percent_Identity=60.7329842931937, Blast_Score=236, Evalue=6e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 20537; Mature: 20406

Theoretical pI: Translated: 4.31; Mature: 4.31

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
9.3 %Cys+Met (Translated Protein)
6.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
8.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSILIAVIAIAALALVFGLILGFASIKFKVESDPIVEQIDAILPQTQCGQCGYPGCKPY
CCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCHHH
AEAIANGDMINKCPPGGQATIEKLADLMGVDVPSSAHDEEKSIKKVAFIHEDMCIGCTKC
HHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
IQACPVDAIVGGTKALHTVIESECTGCDLCVAPCPTDCIEMIPVKTTPDNWKWDLNTIPV
HHHCCCHHHHCCHHHHHHHHHHCCCCCCEECCCCCHHHHHHCCCCCCCCCCEEECCCEEE
VNISTDQPSKSSEL
EEECCCCCCCCCCC
>Mature Secondary Structure 
SSILIAVIAIAALALVFGLILGFASIKFKVESDPIVEQIDAILPQTQCGQCGYPGCKPY
CHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCHHH
AEAIANGDMINKCPPGGQATIEKLADLMGVDVPSSAHDEEKSIKKVAFIHEDMCIGCTKC
HHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
IQACPVDAIVGGTKALHTVIESECTGCDLCVAPCPTDCIEMIPVKTTPDNWKWDLNTIPV
HHHCCCHHHHCCHHHHHHHHHHCCCCCCEECCCCCHHHHHHCCCCCCCCCCEEECCCEEE
VNISTDQPSKSSEL
EEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA