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The map label for this gene is yhaM [C]

Identifier: 59711248

GI number: 59711248

Start: 699824

End: 701101

Strand: Reverse

Name: yhaM [C]

Synonym: VF_0641

Alternate gene names: 59711248

Gene position: 701101-699824 (Counterclockwise)

Preceding gene: 59711249

Following gene: 59711247

Centisome position: 24.2

GC content: 38.97

Gene sequence:

>1278_bases
ATGAACTCTATCTGGAAACAGTACATTGATATTTTACAAGGTGTTGTAAAACCAGCTCTTGGTTGTACTGAACCAATTTG
TGCCGCTTATGCTGCAAGCGTGGCTACACAAATGCTTGGTTCTAAACCAGAAACAATAGACGTTTTTGTTTCTGATAACT
TATACAAAAATAGCATGGGTGTTTTTGTACCAAGAACAGGTAGAGTTGGCCTTGCTATTGCAGCGGCAACTGGGGCAATA
GGTGGTAATCCTGATGCAGGCTTAGAAGTATTAGCAAAGATAACTGAAGAAGAAGTAGATGAAGCACAAAAGCTCATTGA
TAATGGCTGTGTAGTCGTTCAAAGAGAAACCACTGACGAGTTTATTTATTGTCGAGTTATTGCTAAAAATGCGGTTCATA
ATGCTGAAGTTACGATTAGCGGTGGTCACACTCTAATTATTGAAAAACGTCTTGATGATAACGTCATTTTCACGCTGGAT
TCCTCTTTACCAAAAACATCTACAGCGTCAATTTGTGATGGCGTTGATATCACTATCTCATCAATTTATGACTTTGCTAC
CCAAGCAGAGTTTGACGACATTAAATTTATTTTAGAGGCAAAAGAGTTAAATATCGCTCTCGCTCAAGAAGGTTTAAATA
ACCCTTACGGTTTAGAAGTCGGCCGAACCTATCAAAAGAACATTGAAAAAGGATTACTTGCTAAAAGTCTAGATAGTGAC
ATTTTGATCTATACTTCTGCAGCATCTGACGCTCGTATGGGAGGGGCGACACTACCAGCCATGTCGAATTATGGCAGTGG
TAACCAAGGTATTGCAGCAACTATTCCAGTAGTAAAAATGGCTGACTTTTTTAATGCTGATGATGAAAAATTAGCTCGAG
CTTTTATCATGAGTCATCTTGGTGCCATTTATATTAAATCTCACTACCCACCACTTTCTGCTTTTTGTGGTAATGCTGTT
ACTTCTGCAGCAGCATCAATGGCGATGGTATATCTAGCTGGTGGCACGTTTGAACAATCTTGCTCAGCCATTCAAAATAC
CATCAGTGATACCAGCGGTATGATTTGTGACGGTGCAAAATCAACGTGTGCGATGAAAGTGGGAAGTAGCGCTCAATCAG
CAATGAAATCTGCTCTATTAGCACTAAATGATCATTGTGTAACGAAGCAAGGTGTGATTGCTGATGATGTTGAAAAGACA
ATTAAAAACATTGGCAGAATGATCACAACAGGTATGCCTAATATTGATCATGAAATCATTGAAATAATGGCGTCATAA

Upstream 100 bases:

>100_bases
CGCTCATGTTTTGCCGTTAAAGATCTTCCACTTGGCGTATTAGTTGAAGTTGAAGCGATTGCACATCAAAAATAATAATT
AGATATAAAAGGTGACCATC

Downstream 100 bases:

>100_bases
TGAAAAGATGTCACTTACCCGTTAAGTGACATCTCATTTCACCAACATAAAGAACATATATGCTACATAAACTGACTACA
GCCGATAAACTCATACTCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MNSIWKQYIDILQGVVKPALGCTEPICAAYAASVATQMLGSKPETIDVFVSDNLYKNSMGVFVPRTGRVGLAIAAATGAI
GGNPDAGLEVLAKITEEEVDEAQKLIDNGCVVVQRETTDEFIYCRVIAKNAVHNAEVTISGGHTLIIEKRLDDNVIFTLD
SSLPKTSTASICDGVDITISSIYDFATQAEFDDIKFILEAKELNIALAQEGLNNPYGLEVGRTYQKNIEKGLLAKSLDSD
ILIYTSAASDARMGGATLPAMSNYGSGNQGIAATIPVVKMADFFNADDEKLARAFIMSHLGAIYIKSHYPPLSAFCGNAV
TSAAASMAMVYLAGGTFEQSCSAIQNTISDTSGMICDGAKSTCAMKVGSSAQSAMKSALLALNDHCVTKQGVIADDVEKT
IKNIGRMITTGMPNIDHEIIEIMAS

Sequences:

>Translated_425_residues
MNSIWKQYIDILQGVVKPALGCTEPICAAYAASVATQMLGSKPETIDVFVSDNLYKNSMGVFVPRTGRVGLAIAAATGAI
GGNPDAGLEVLAKITEEEVDEAQKLIDNGCVVVQRETTDEFIYCRVIAKNAVHNAEVTISGGHTLIIEKRLDDNVIFTLD
SSLPKTSTASICDGVDITISSIYDFATQAEFDDIKFILEAKELNIALAQEGLNNPYGLEVGRTYQKNIEKGLLAKSLDSD
ILIYTSAASDARMGGATLPAMSNYGSGNQGIAATIPVVKMADFFNADDEKLARAFIMSHLGAIYIKSHYPPLSAFCGNAV
TSAAASMAMVYLAGGTFEQSCSAIQNTISDTSGMICDGAKSTCAMKVGSSAQSAMKSALLALNDHCVTKQGVIADDVEKT
IKNIGRMITTGMPNIDHEIIEIMAS
>Mature_425_residues
MNSIWKQYIDILQGVVKPALGCTEPICAAYAASVATQMLGSKPETIDVFVSDNLYKNSMGVFVPRTGRVGLAIAAATGAI
GGNPDAGLEVLAKITEEEVDEAQKLIDNGCVVVQRETTDEFIYCRVIAKNAVHNAEVTISGGHTLIIEKRLDDNVIFTLD
SSLPKTSTASICDGVDITISSIYDFATQAEFDDIKFILEAKELNIALAQEGLNNPYGLEVGRTYQKNIEKGLLAKSLDSD
ILIYTSAASDARMGGATLPAMSNYGSGNQGIAATIPVVKMADFFNADDEKLARAFIMSHLGAIYIKSHYPPLSAFCGNAV
TSAAASMAMVYLAGGTFEQSCSAIQNTISDTSGMICDGAKSTCAMKVGSSAQSAMKSALLALNDHCVTKQGVIADDVEKT
IKNIGRMITTGMPNIDHEIIEIMAS

Specific function: Unknown

COG id: COG3681

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0597 family

Homologues:

Organism=Escherichia coli, GI48994923, Length=428, Percent_Identity=49.0654205607477, Blast_Score=374, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y641_VIBF1 (Q5E760)

Other databases:

- EMBL:   CP000020
- RefSeq:   YP_204024.1
- STRING:   Q5E760
- GeneID:   3278056
- GenomeReviews:   CP000020_GR
- KEGG:   vfi:VF_0641
- NMPDR:   fig|312309.3.peg.1142
- eggNOG:   COG3681
- HOGENOM:   HBG296671
- OMA:   LSGMICD
- PhylomeDB:   Q5E760
- ProtClustDB:   CLSK906244
- BioCyc:   VFIS312309:VF0641-MONOMER
- HAMAP:   MF_01845
- InterPro:   IPR005130
- InterPro:   IPR021144
- PIRSF:   PIRSF006054

Pfam domain/function: PF03313 SDH_alpha

EC number: NA

Molecular weight: Translated: 45047; Mature: 45047

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSIWKQYIDILQGVVKPALGCTEPICAAYAASVATQMLGSKPETIDVFVSDNLYKNSMG
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEECCCC
VFVPRTGRVGLAIAAATGAIGGNPDAGLEVLAKITEEEVDEAQKLIDNGCVVVQRETTDE
EEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
FIYCRVIAKNAVHNAEVTISGGHTLIIEKRLDDNVIFTLDSSLPKTSTASICDGVDITIS
EEEEEEEHHCCCCCCEEEEECCEEEEEEEECCCCEEEEECCCCCCCCCHHHHCCCCEEHH
SIYDFATQAEFDDIKFILEAKELNIALAQEGLNNPYGLEVGRTYQKNIEKGLLAKSLDSD
HHHHHHHCCCCCHHHEEEEHHHHHEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
ILIYTSAASDARMGGATLPAMSNYGSGNQGIAATIPVVKMADFFNADDEKLARAFIMSHL
EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHH
GAIYIKSHYPPLSAFCGNAVTSAAASMAMVYLAGGTFEQSCSAIQNTISDTSGMICDGAK
CEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHCCCCEECCCC
STCAMKVGSSAQSAMKSALLALNDHCVTKQGVIADDVEKTIKNIGRMITTGMPNIDHEII
CCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHH
EIMAS
HHHCC
>Mature Secondary Structure
MNSIWKQYIDILQGVVKPALGCTEPICAAYAASVATQMLGSKPETIDVFVSDNLYKNSMG
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEECCCC
VFVPRTGRVGLAIAAATGAIGGNPDAGLEVLAKITEEEVDEAQKLIDNGCVVVQRETTDE
EEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
FIYCRVIAKNAVHNAEVTISGGHTLIIEKRLDDNVIFTLDSSLPKTSTASICDGVDITIS
EEEEEEEHHCCCCCCEEEEECCEEEEEEEECCCCEEEEECCCCCCCCCHHHHCCCCEEHH
SIYDFATQAEFDDIKFILEAKELNIALAQEGLNNPYGLEVGRTYQKNIEKGLLAKSLDSD
HHHHHHHCCCCCHHHEEEEHHHHHEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
ILIYTSAASDARMGGATLPAMSNYGSGNQGIAATIPVVKMADFFNADDEKLARAFIMSHL
EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHH
GAIYIKSHYPPLSAFCGNAVTSAAASMAMVYLAGGTFEQSCSAIQNTISDTSGMICDGAK
CEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHCCCCEECCCC
STCAMKVGSSAQSAMKSALLALNDHCVTKQGVIADDVEKTIKNIGRMITTGMPNIDHEII
CCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHH
EIMAS
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA