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The map label for this gene is tdcF [C]

Identifier: 59711249

GI number: 59711249

Start: 701127

End: 701507

Strand: Reverse

Name: tdcF [C]

Synonym: VF_0642

Alternate gene names: 59711249

Gene position: 701507-701127 (Counterclockwise)

Preceding gene: 59711251

Following gene: 59711248

Centisome position: 24.21

GC content: 37.53

Gene sequence:

>381_bases
ATGAAAGAAATTATTGTTGCTGCATCTGCACCTGAAGCTATTGGCCCATATTCTCATGGCACACAATTTAACGGTCTTAT
TTTTACATCAGGTCAATTACCTGTAGATGGTTCTACTTCTAAAGTAGTTGAAGGTGGAATCACAGAACAGTCACAAATGT
CTCTACAAAATTTAATTGCAGTTATTGAAGCTGGTGGCGGTGATGTAAACACAGTTTTAAAAACAACTTGTTACCTTGCA
AATATTACTGACTTCGCTGCGTTTAACGAAGTATACAAAACCGTTTTCAAAACAGACTGCCCTGCTCGCTCATGTTTTGC
CGTTAAAGATCTTCCACTTGGCGTATTAGTTGAAGTTGAAGCGATTGCACATCAAAAATAA

Upstream 100 bases:

>100_bases
AATTAAGCATAAATTCACCCAACAAGCTCAATGCAATTATTTTTGCATGACTTGAAGAAAAACTTAAAATTCAAAATTTA
TTGCAAGTAAGTAGGTTTAT

Downstream 100 bases:

>100_bases
TAATTAGATATAAAAGGTGACCATCATGAACTCTATCTGGAAACAGTACATTGATATTTTACAAGGTGTTGTAAAACCAG
CTCTTGGTTGTACTGAACCA

Product: endoribonuclease L-PSP, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MKEIIVAASAPEAIGPYSHGTQFNGLIFTSGQLPVDGSTSKVVEGGITEQSQMSLQNLIAVIEAGGGDVNTVLKTTCYLA
NITDFAAFNEVYKTVFKTDCPARSCFAVKDLPLGVLVEVEAIAHQK

Sequences:

>Translated_126_residues
MKEIIVAASAPEAIGPYSHGTQFNGLIFTSGQLPVDGSTSKVVEGGITEQSQMSLQNLIAVIEAGGGDVNTVLKTTCYLA
NITDFAAFNEVYKTVFKTDCPARSCFAVKDLPLGVLVEVEAIAHQK
>Mature_126_residues
MKEIIVAASAPEAIGPYSHGTQFNGLIFTSGQLPVDGSTSKVVEGGITEQSQMSLQNLIAVIEAGGGDVNTVLKTTCYLA
NITDFAAFNEVYKTVFKTDCPARSCFAVKDLPLGVLVEVEAIAHQK

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=125, Percent_Identity=41.6, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI87082213, Length=126, Percent_Identity=41.2698412698413, Blast_Score=100, Evalue=2e-23,
Organism=Escherichia coli, GI87082396, Length=129, Percent_Identity=39.5348837209302, Blast_Score=97, Evalue=3e-22,
Organism=Escherichia coli, GI1787245, Length=123, Percent_Identity=29.2682926829268, Blast_Score=67, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71982068, Length=122, Percent_Identity=48.3606557377049, Blast_Score=112, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI71982075, Length=122, Percent_Identity=48.3606557377049, Blast_Score=112, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI25148896, Length=122, Percent_Identity=48.3606557377049, Blast_Score=112, Evalue=4e-26,
Organism=Saccharomyces cerevisiae, GI6320899, Length=105, Percent_Identity=46.6666666666667, Blast_Score=97, Evalue=6e-22,
Organism=Saccharomyces cerevisiae, GI6322138, Length=117, Percent_Identity=36.7521367521368, Blast_Score=89, Evalue=3e-19,
Organism=Drosophila melanogaster, GI19921376, Length=123, Percent_Identity=44.7154471544715, Blast_Score=114, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13308; Mature: 13308

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEIIVAASAPEAIGPYSHGTQFNGLIFTSGQLPVDGSTSKVVEGGITEQSQMSLQNLIA
CCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHEECCCCCHHHHHHHHHHH
VIEAGGGDVNTVLKTTCYLANITDFAAFNEVYKTVFKTDCPARSCFAVKDLPLGVLVEVE
HHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEEH
AIAHQK
HHCCCC
>Mature Secondary Structure
MKEIIVAASAPEAIGPYSHGTQFNGLIFTSGQLPVDGSTSKVVEGGITEQSQMSLQNLIA
CCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHEECCCCCHHHHHHHHHHH
VIEAGGGDVNTVLKTTCYLANITDFAAFNEVYKTVFKTDCPARSCFAVKDLPLGVLVEVE
HHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEEH
AIAHQK
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]