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The map label for this gene is csdE [H]

Identifier: 59711196

GI number: 59711196

Start: 647251

End: 647676

Strand: Reverse

Name: csdE [H]

Synonym: VF_0589

Alternate gene names: 59711196

Gene position: 647676-647251 (Counterclockwise)

Preceding gene: 59711197

Following gene: 59711192

Centisome position: 22.35

GC content: 40.14

Gene sequence:

>426_bases
ATGTCCACTTTCCCATCATCGCCTTTTGGTTTTGACATTACTCACTCGACAGTACTTGATTTAATGAGTAACGCTAAAGG
TTGGGAAGACCGCTACCGTAACGTAATTCAATTAGGTAAAAAACTGCCTAGCATGCCTGAAGAGCTACAACAAGAGAACG
TGACGATCTCTGGTTGTGAAAGTAAAGTATGGTTACAACATGAAATCGTTGATGGTGTTTATTTTTTCTGCGCAGACTCT
GATGCAAGAATTGTTCGTGGGCTTATCGCATTAGTCATGGCGGCAGTTAATAATAAAACCGCAGAAGAGATTAAGGCGTT
TGATATGGATGGGTATTTTGCTCAATTGGGGTTAATTGAACATTTAAGCCCATCACGTGGTAATGGGCTTAAAGCGATCA
TTGAAACGATCAACGGCTTAATTTAA

Upstream 100 bases:

>100_bases
CATTTGCCTTGTATAATACAAAACAAGATGTTCAACGTTTTATCGACGCGCTAAACAAAGCCGCAGATATGCTATAAGCT
CAAATTTAAGGTATTCATTT

Downstream 100 bases:

>100_bases
AGCAGGAACGAGAACGCTTCGCTTCAAGAAGCTAAGTACGAGAAAGGCTTTTACTCGTACCTTACTTCTAATCCCTAGTC
CCTACTTACTGTGTTTCTCA

Product: Fe-S metabolism protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MSTFPSSPFGFDITHSTVLDLMSNAKGWEDRYRNVIQLGKKLPSMPEELQQENVTISGCESKVWLQHEIVDGVYFFCADS
DARIVRGLIALVMAAVNNKTAEEIKAFDMDGYFAQLGLIEHLSPSRGNGLKAIIETINGLI

Sequences:

>Translated_141_residues
MSTFPSSPFGFDITHSTVLDLMSNAKGWEDRYRNVIQLGKKLPSMPEELQQENVTISGCESKVWLQHEIVDGVYFFCADS
DARIVRGLIALVMAAVNNKTAEEIKAFDMDGYFAQLGLIEHLSPSRGNGLKAIIETINGLI
>Mature_140_residues
STFPSSPFGFDITHSTVLDLMSNAKGWEDRYRNVIQLGKKLPSMPEELQQENVTISGCESKVWLQHEIVDGVYFFCADSD
ARIVRGLIALVMAAVNNKTAEEIKAFDMDGYFAQLGLIEHLSPSRGNGLKAIIETINGLI

Specific function: Unknown

COG id: COG2166

COG function: function code R; SufE protein probably involved in Fe-S center assembly

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sufE family [H]

Homologues:

Organism=Escherichia coli, GI1789176, Length=135, Percent_Identity=42.962962962963, Blast_Score=119, Evalue=8e-29,
Organism=Escherichia coli, GI1787969, Length=108, Percent_Identity=37.962962962963, Blast_Score=89, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017763
- InterPro:   IPR003808 [H]

Pfam domain/function: PF02657 SufE [H]

EC number: NA

Molecular weight: Translated: 15623; Mature: 15492

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTFPSSPFGFDITHSTVLDLMSNAKGWEDRYRNVIQLGKKLPSMPEELQQENVTISGCE
CCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCC
SKVWLQHEIVDGVYFFCADSDARIVRGLIALVMAAVNNKTAEEIKAFDMDGYFAQLGLIE
CHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHH
HLSPSRGNGLKAIIETINGLI
HCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
STFPSSPFGFDITHSTVLDLMSNAKGWEDRYRNVIQLGKKLPSMPEELQQENVTISGCE
CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCC
SKVWLQHEIVDGVYFFCADSDARIVRGLIALVMAAVNNKTAEEIKAFDMDGYFAQLGLIE
CHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHH
HLSPSRGNGLKAIIETINGLI
HCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]