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The map label for this gene is ypjD [H]

Identifier: 59711154

GI number: 59711154

Start: 595943

End: 596737

Strand: Reverse

Name: ypjD [H]

Synonym: VF_0547

Alternate gene names: 59711154

Gene position: 596737-595943 (Counterclockwise)

Preceding gene: 59711162

Following gene: 59711153

Centisome position: 20.59

GC content: 37.61

Gene sequence:

>795_bases
ATGGATACCATTACAGCAATCGGTGCTGCTCTATCTTACTTTCTTGCATTAGGCTTTGTTATCCCAGGCTTAGCAAGTAA
AAATAAAATTCAGACCAAAGTTGTGTTCGTTTGTGCATTCCTTGCGCTGCTTTTGCATGCCTGGCAACTCAAAGAGCTCA
TTTTAAATACTGCCGGACAAAACCTAAGTATTTTAAATGTCGCTTCTCTTATTAGCTTTATTATATCGCTAGTAATGAGT
GTCTCTATGCTCAAGTTCCGAGTATGGTTCATTTTACCTGTGGTTTATAGCTTTTCTGCCATTAACTTATTAGCAGCGAC
TTTCTTGCCAGGTGCATTTATTACTCACCTTGAAACTCACCCAAGTTTACTCATCCACATATCTTTGGCTTTATTTGCTT
ATTCAACATTGATGATTGCTACACTCTATGCGCTTCAATTAGCTTGGCTTGATCATAAACTCAAAAGCAAAAAATCATTA
ATGTTAAATCCAAACCTTCCTCCATTAATGATGGTTGAACGCCAACTTTTCAAGATCATTCTTGTGGGTTTATTACTACT
CACTCTTACATTAATGACTGGATTCACATTTATTCAAGATATGTTTGCTCAGGGTAAAGCTCACAAAGCAATACTTTCCT
TTATTGCTTGGATTATCTACGCAACATTAACTTGGGGCCACTATCAGCGTGGGTGGCGTGGTCAAAAAGCATTATGGTTC
AGTTTATCTGGTGCTTTCTTACTGACCCTTGCTTACTTTGGTAGCCGTTTTGTTCAAGAGATTGTGTTAACTTAA

Upstream 100 bases:

>100_bases
GTAATAATGAAAATTTTTTAACCTAACTGAATCACACCTACCGAGATTGTCCTGTAGAGGGTATAATCAAGATGTTGATA
AACTAGGTGAACAGTAAATT

Downstream 100 bases:

>100_bases
TTGCGACAATCGCTCACTTTTTGTATTCAAACTTGACAGACGGATTATCAGATTAGATAAATACCTTTTAATTATATCAA
TCTAAGTAAGTGCTTAGGTT

Product: CcsA-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MDTITAIGAALSYFLALGFVIPGLASKNKIQTKVVFVCAFLALLLHAWQLKELILNTAGQNLSILNVASLISFIISLVMS
VSMLKFRVWFILPVVYSFSAINLLAATFLPGAFITHLETHPSLLIHISLALFAYSTLMIATLYALQLAWLDHKLKSKKSL
MLNPNLPPLMMVERQLFKIILVGLLLLTLTLMTGFTFIQDMFAQGKAHKAILSFIAWIIYATLTWGHYQRGWRGQKALWF
SLSGAFLLTLAYFGSRFVQEIVLT

Sequences:

>Translated_264_residues
MDTITAIGAALSYFLALGFVIPGLASKNKIQTKVVFVCAFLALLLHAWQLKELILNTAGQNLSILNVASLISFIISLVMS
VSMLKFRVWFILPVVYSFSAINLLAATFLPGAFITHLETHPSLLIHISLALFAYSTLMIATLYALQLAWLDHKLKSKKSL
MLNPNLPPLMMVERQLFKIILVGLLLLTLTLMTGFTFIQDMFAQGKAHKAILSFIAWIIYATLTWGHYQRGWRGQKALWF
SLSGAFLLTLAYFGSRFVQEIVLT
>Mature_264_residues
MDTITAIGAALSYFLALGFVIPGLASKNKIQTKVVFVCAFLALLLHAWQLKELILNTAGQNLSILNVASLISFIISLVMS
VSMLKFRVWFILPVVYSFSAINLLAATFLPGAFITHLETHPSLLIHISLALFAYSTLMIATLYALQLAWLDHKLKSKKSL
MLNPNLPPLMMVERQLFKIILVGLLLLTLTLMTGFTFIQDMFAQGKAHKAILSFIAWIIYATLTWGHYQRGWRGQKALWF
SLSGAFLLTLAYFGSRFVQEIVLT

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=256, Percent_Identity=48.828125, Blast_Score=247, Evalue=5e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 29516; Mature: 29516

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTITAIGAALSYFLALGFVIPGLASKNKIQTKVVFVCAFLALLLHAWQLKELILNTAGQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NLSILNVASLISFIISLVMSVSMLKFRVWFILPVVYSFSAINLLAATFLPGAFITHLETH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
PSLLIHISLALFAYSTLMIATLYALQLAWLDHKLKSKKSLMLNPNLPPLMMVERQLFKII
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
LVGLLLLTLTLMTGFTFIQDMFAQGKAHKAILSFIAWIIYATLTWGHYQRGWRGQKALWF
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEE
SLSGAFLLTLAYFGSRFVQEIVLT
EHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDTITAIGAALSYFLALGFVIPGLASKNKIQTKVVFVCAFLALLLHAWQLKELILNTAGQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NLSILNVASLISFIISLVMSVSMLKFRVWFILPVVYSFSAINLLAATFLPGAFITHLETH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
PSLLIHISLALFAYSTLMIATLYALQLAWLDHKLKSKKSLMLNPNLPPLMMVERQLFKII
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
LVGLLLLTLTLMTGFTFIQDMFAQGKAHKAILSFIAWIIYATLTWGHYQRGWRGQKALWF
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEE
SLSGAFLLTLAYFGSRFVQEIVLT
EHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]