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The map label for this gene is yhbY [H]

Identifier: 59711084

GI number: 59711084

Start: 512957

End: 513253

Strand: Reverse

Name: yhbY [H]

Synonym: VF_0477

Alternate gene names: 59711084

Gene position: 513253-512957 (Counterclockwise)

Preceding gene: 59711099

Following gene: 59711082

Centisome position: 17.71

GC content: 36.36

Gene sequence:

>297_bases
ATGAACCTAAGCACAAAACAGAAGCAATACCTTAAAGGTCTTGCTCACAACCTAAAACCCGTTGTATTGATGGGTGCAAA
TGGTCTAACAGAAGCTGTAGTAGCTGAGATTGAAATTGCACTTAATCATCACGAGTTAATTAAAGTTAAAGTCGCTTCTG
AAGACCGTGATACTAAACAACTGATTGTTGAAGCAATTATCCGTGAAACAGAAGCTGAAAAAGTTCAAGTTATCGGTAAA
ACACTTGTTTTATACCGTCCTAGCGAAGATCGTAAAATCGAAATTCCTAGAAAATAA

Upstream 100 bases:

>100_bases
TAATTAAAATTAGAAGACTGCAACAAAAAATAGTCTTCCTGCTTAGATGGCGTTAGAATAGGCTGTTTTCAACCCTTAAT
ATAGAAAAAATCGGGTATAT

Downstream 100 bases:

>100_bases
TTTCTTTCATTTAGTCTAAAGAAATTAAAAAGGCCGTATTAGTTATCTTTAAAGTAGAGCTAACTATGCGGCCTTTGTGT
TTCATACAAGTAATAAATAT

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MNLSTKQKQYLKGLAHNLKPVVLMGANGLTEAVVAEIEIALNHHELIKVKVASEDRDTKQLIVEAIIRETEAEKVQVIGK
TLVLYRPSEDRKIEIPRK

Sequences:

>Translated_98_residues
MNLSTKQKQYLKGLAHNLKPVVLMGANGLTEAVVAEIEIALNHHELIKVKVASEDRDTKQLIVEAIIRETEAEKVQVIGK
TLVLYRPSEDRKIEIPRK
>Mature_98_residues
MNLSTKQKQYLKGLAHNLKPVVLMGANGLTEAVVAEIEIALNHHELIKVKVASEDRDTKQLIVEAIIRETEAEKVQVIGK
TLVLYRPSEDRKIEIPRK

Specific function: Unknown

COG id: COG1534

COG function: function code J; Predicted RNA-binding protein containing KH domain, possibly ribosomal protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CRM domain [H]

Homologues:

Organism=Escherichia coli, GI1789570, Length=97, Percent_Identity=78.3505154639175, Blast_Score=155, Evalue=6e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001890
- InterPro:   IPR017924
- ProDom:   PD010559 [H]

Pfam domain/function: PF01985 CRS1_YhbY [H]

EC number: NA

Molecular weight: Translated: 11053; Mature: 11053

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLSTKQKQYLKGLAHNLKPVVLMGANGLTEAVVAEIEIALNHHELIKVKVASEDRDTKQ
CCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHEEECCCEEEEEEECCCCCCHHH
LIVEAIIRETEAEKVQVIGKTLVLYRPSEDRKIEIPRK
HHHHHHHHCCCHHHHHEEEEEEEEECCCCCCEEECCCC
>Mature Secondary Structure
MNLSTKQKQYLKGLAHNLKPVVLMGANGLTEAVVAEIEIALNHHELIKVKVASEDRDTKQ
CCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHEEECCCEEEEEEECCCCCCHHH
LIVEAIIRETEAEKVQVIGKTLVLYRPSEDRKIEIPRK
HHHHHHHHCCCHHHHHEEEEEEEEECCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]