Click here to switch to the map view.

The map label for this gene is ompU [H]

Identifier: 59711082

GI number: 59711082

Start: 510829

End: 511797

Strand: Reverse

Name: ompU [H]

Synonym: VF_0475

Alternate gene names: 59711082

Gene position: 511797-510829 (Counterclockwise)

Preceding gene: 59711084

Following gene: 59711081

Centisome position: 17.66

GC content: 43.86

Gene sequence:

>969_bases
ATGATGAACAAAAAAGTATTAGCTCTAGCAGTAGCAGCAATTACTTCAGCTGGTGCAGTAAACGCAGCAGAACTTTATAA
AGACGAAGCACAATCTATCGAAATGGGCGGCCGTGCTGAAGCACGTCTAGCTATGAAAGATGGTGACGCTGCAGATAACA
CTCGTATCCGTCTAAACTTTAAAGGTACAACTCAAATTTCTGACGGCCTATACGGTGTAGGTTTCTGGGAAGGTGAATTT
ACAACTAACGATGCTGTAAATCCAAACGGCAACCTTGAAAACCGTTACACATACGCAGGTATCGGTGGTAACTTCGGTGA
AGTAACTTACGGTAAAAACGACGGTGCTCTAGGTGTTATCACTGACTTCACTGATATCATGGCTTACCACGGTAACTCTG
CGGCATACAAACTAGCAGTAGCTGACCGTGAAGACAACGCAATTGCTTACAAAGGTCAATTTGGCGATTTCGCATTCAAA
GCAAACTACCGTTTTGATGATGCAGCAGCTAACCAAGAAAGCAACGACGGCTTCTCTACTTCTGGTATCTACGCATTCGG
TGACTCTGGTTTCAAACTAGGTGCTGGTTACGCTGATCAAGGTACAGACAACGAAGCAATGGTTGCTGGTTCGATGACTA
TGGGCGACTTCTACTTCGCTGGTACATTCACTACAGGTGAAGTTGTTGACCTAGACTACACAGGTTTCGAAGTAGCTGGT
GCTTACACAATGGGTAAAACTGTATTCACAGCGACATACAACAACGCTGACCACGATACAAATGCTCTAACTGTTGCTAA
CAACGAAAACGCTGACAACTTTGCTGTTGATGCTACTTACTTCTTCAACGCAAACTTCCGTACTTACATCTCTTACAACC
TGAACCTTCTTGATGACGATGCATCAAAAGGTATCACTAAAGCGATGACAGAAGACGAAGTTGCTCTAGGTATGCGTTAC
GACTTCTAA

Upstream 100 bases:

>100_bases
AAGGTAACTGATTAGAAACTCTTAGACATAAGAAGCAATAAACAGTTCGTTTCATTTAAAATGGAAATTAATCTCCTCCA
CCCTTATAGGAATTAGAATA

Downstream 100 bases:

>100_bases
TCAGTCTTAACTCTTACTTAAATAAAGCGCTCACCTCGGTGGGCGTTTTTTATTTGTGACGCCTTCTGAAATTTTTCTAA
TTCATTACACATCATTATCA

Product: Outer membrane protein U porin OmpU

Products: NA

Alternate protein names: Porin ompU [H]

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MMNKKVLALAVAAITSAGAVNAAELYKDEAQSIEMGGRAEARLAMKDGDAADNTRIRLNFKGTTQISDGLYGVGFWEGEF
TTNDAVNPNGNLENRYTYAGIGGNFGEVTYGKNDGALGVITDFTDIMAYHGNSAAYKLAVADREDNAIAYKGQFGDFAFK
ANYRFDDAAANQESNDGFSTSGIYAFGDSGFKLGAGYADQGTDNEAMVAGSMTMGDFYFAGTFTTGEVVDLDYTGFEVAG
AYTMGKTVFTATYNNADHDTNALTVANNENADNFAVDATYFFNANFRTYISYNLNLLDDDASKGITKAMTEDEVALGMRY
DF

Sequences:

>Translated_322_residues
MMNKKVLALAVAAITSAGAVNAAELYKDEAQSIEMGGRAEARLAMKDGDAADNTRIRLNFKGTTQISDGLYGVGFWEGEF
TTNDAVNPNGNLENRYTYAGIGGNFGEVTYGKNDGALGVITDFTDIMAYHGNSAAYKLAVADREDNAIAYKGQFGDFAFK
ANYRFDDAAANQESNDGFSTSGIYAFGDSGFKLGAGYADQGTDNEAMVAGSMTMGDFYFAGTFTTGEVVDLDYTGFEVAG
AYTMGKTVFTATYNNADHDTNALTVANNENADNFAVDATYFFNANFRTYISYNLNLLDDDASKGITKAMTEDEVALGMRY
DF
>Mature_322_residues
MMNKKVLALAVAAITSAGAVNAAELYKDEAQSIEMGGRAEARLAMKDGDAADNTRIRLNFKGTTQISDGLYGVGFWEGEF
TTNDAVNPNGNLENRYTYAGIGGNFGEVTYGKNDGALGVITDFTDIMAYHGNSAAYKLAVADREDNAIAYKGQFGDFAFK
ANYRFDDAAANQESNDGFSTSGIYAFGDSGFKLGAGYADQGTDNEAMVAGSMTMGDFYFAGTFTTGEVVDLDYTGFEVAG
AYTMGKTVFTATYNNADHDTNALTVANNENADNFAVDATYFFNANFRTYISYNLNLLDDDASKGITKAMTEDEVALGMRY
DF

Specific function: Uptake Of Inorganic Phosphate, Phosphorylated Compounds, And Some Other Negatively Charged Solutes. [C]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1786436, Length=357, Percent_Identity=27.1708683473389, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788544, Length=385, Percent_Identity=27.7922077922078, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1787641, Length=382, Percent_Identity=28.5340314136126, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787160, Length=146, Percent_Identity=32.1917808219178, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 794 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 34578; Mature: 34578

Theoretical pI: Translated: 4.02; Mature: 4.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNKKVLALAVAAITSAGAVNAAELYKDEAQSIEMGGRAEARLAMKDGDAADNTRIRLNF
CCCCHHHEEEEEHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEE
KGTTQISDGLYGVGFWEGEFTTNDAVNPNGNLENRYTYAGIGGNFGEVTYGKNDGALGVI
CCCCEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCCEEEEE
TDFTDIMAYHGNSAAYKLAVADREDNAIAYKGQFGDFAFKANYRFDDAAANQESNDGFST
ECHHEEHEECCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCCHHCCCCCCCCCCCC
SGIYAFGDSGFKLGAGYADQGTDNEAMVAGSMTMGDFYFAGTFTTGEVVDLDYTGFEVAG
CCEEEECCCCEEECCCCCCCCCCCCEEEEECEEECCEEEEEEECCCCEEEEECCCEEEEE
AYTMGKTVFTATYNNADHDTNALTVANNENADNFAVDATYFFNANFRTYISYNLNLLDDD
EEEECCEEEEEEECCCCCCCCEEEEECCCCCCCEEEEEEEEEECCEEEEEEEEEEEECCC
ASKGITKAMTEDEVALGMRYDF
CCCCHHHHCCCCCEEEEEEECC
>Mature Secondary Structure
MMNKKVLALAVAAITSAGAVNAAELYKDEAQSIEMGGRAEARLAMKDGDAADNTRIRLNF
CCCCHHHEEEEEHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEE
KGTTQISDGLYGVGFWEGEFTTNDAVNPNGNLENRYTYAGIGGNFGEVTYGKNDGALGVI
CCCCEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCCEEEEE
TDFTDIMAYHGNSAAYKLAVADREDNAIAYKGQFGDFAFKANYRFDDAAANQESNDGFST
ECHHEEHEECCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCCHHCCCCCCCCCCCC
SGIYAFGDSGFKLGAGYADQGTDNEAMVAGSMTMGDFYFAGTFTTGEVVDLDYTGFEVAG
CCEEEECCCCEEECCCCCCCCCCCCEEEEECEEECCEEEEEEECCCCEEEEECCCEEEEE
AYTMGKTVFTATYNNADHDTNALTVANNENADNFAVDATYFFNANFRTYISYNLNLLDDD
EEEECCEEEEEEECCCCCCCCEEEEECCCCCCCEEEEEEEEEECCEEEEEEEEEEEECCC
ASKGITKAMTEDEVALGMRYDF
CCCCHHHHCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]