Definition | Ehrlichia ruminantium str. Gardel, complete genome. |
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Accession | NC_006831 |
Length | 1,499,920 |
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The map label for this gene is surf1
Identifier: 58617599
GI number: 58617599
Start: 1392529
End: 1393170
Strand: Reverse
Name: surf1
Synonym: ERGA_CDS_08720
Alternate gene names: NA
Gene position: 1393170-1392529 (Counterclockwise)
Preceding gene: 58617601
Following gene: 58617597
Centisome position: 92.88
GC content: 29.44
Gene sequence:
>642_bases ATGTGGCGTATAAAATTTATTTTTGTTTTTGCTATTCCATTTTCCATTATGATAACACTTGGTACATGGCAGGTGTTTAG GTTAAAAGAAAAGAATATTATTATTCATAATATGCAAGCTTTACCTGTAAAATTATCAAGTGATAATCTTGTATCACAAC GTTATAATCATGTAATTGCAAATGGATCTTTTGATAATGATCATAAGTTTTTTGTTTTTGCTGGTACTTTAGGTTATTAT GTATTACAGCCATTTCACTTGAATGATGGTAGGTATATATTAATAAATAAAGGAACAATAGCTGATAGAAAAAAGGAACT TAAGCTTTTTGATAATGACCAACGTAGTGTAACCGGTATTCTCTATTGTGATCATAATAAAAAAGTTGGATGGTTTGTAA AAAATGATATTGATGATAATCTGTGGTTTTGGTTTGATATAGAAGCTATGATCAAAACAGTAAATATTCCATTGGAAAGT TGTATAATATGGGCAAATGATACAGTAGACTCTAATGGTATTACAATAAATGTACCACTGAAGGTCAGAAATGATCATCT AGAATATATAATTACTTGGTATGTACTTGCATTAGTGTGGTTGGTGGGATATCTGTATTGGTGTCGTAGTAAAACGACCT AA
Upstream 100 bases:
>100_bases ATTAAAATGTATATATAACAAAAGTGTTTAAATTTTACATACTATCTATGCCTATTATAATGTATGTTTTATAAGTTATG GAGTTATATAAAAGTAATAG
Downstream 100 bases:
>100_bases AAATTTTTGGTATATAAGAATAAGTATATGTTGGGATGATATAGGTTATCCAGTAATTTTTAATGATGTTAATTAGACTA AAGCTCAGAAATAATTGTCT
Product: Surf1-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 213; Mature: 213
Protein sequence:
>213_residues MWRIKFIFVFAIPFSIMITLGTWQVFRLKEKNIIIHNMQALPVKLSSDNLVSQRYNHVIANGSFDNDHKFFVFAGTLGYY VLQPFHLNDGRYILINKGTIADRKKELKLFDNDQRSVTGILYCDHNKKVGWFVKNDIDDNLWFWFDIEAMIKTVNIPLES CIIWANDTVDSNGITINVPLKVRNDHLEYIITWYVLALVWLVGYLYWCRSKTT
Sequences:
>Translated_213_residues MWRIKFIFVFAIPFSIMITLGTWQVFRLKEKNIIIHNMQALPVKLSSDNLVSQRYNHVIANGSFDNDHKFFVFAGTLGYY VLQPFHLNDGRYILINKGTIADRKKELKLFDNDQRSVTGILYCDHNKKVGWFVKNDIDDNLWFWFDIEAMIKTVNIPLES CIIWANDTVDSNGITINVPLKVRNDHLEYIITWYVLALVWLVGYLYWCRSKTT >Mature_213_residues MWRIKFIFVFAIPFSIMITLGTWQVFRLKEKNIIIHNMQALPVKLSSDNLVSQRYNHVIANGSFDNDHKFFVFAGTLGYY VLQPFHLNDGRYILINKGTIADRKKELKLFDNDQRSVTGILYCDHNKKVGWFVKNDIDDNLWFWFDIEAMIKTVNIPLES CIIWANDTVDSNGITINVPLKVRNDHLEYIITWYVLALVWLVGYLYWCRSKTT
Specific function: Unknown
COG id: COG3346
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the SURF1 family [H]
Homologues:
Organism=Homo sapiens, GI4507319, Length=210, Percent_Identity=29.0476190476191, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17553856, Length=240, Percent_Identity=26.25, Blast_Score=70, Evalue=7e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002994 [H]
Pfam domain/function: PF02104 SURF1 [H]
EC number: NA
Molecular weight: Translated: 25076; Mature: 25076
Theoretical pI: Translated: 8.75; Mature: 8.75
Prosite motif: PS50895 SURF1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWRIKFIFVFAIPFSIMITLGTWQVFRLKEKNIIIHNMQALPVKLSSDNLVSQRYNHVIA CEEEEEEEEEEECCEEEEEECCEEEEEEECCCEEEEECEEEEEEECCCCHHHHHCCEEEE NGSFDNDHKFFVFAGTLGYYVLQPFHLNDGRYILINKGTIADRKKELKLFDNDQRSVTGI CCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEEECCCCCCCCCEEEEEECCCCEEEEE LYCDHNKKVGWFVKNDIDDNLWFWFDIEAMIKTVNIPLESCIIWANDTVDSNGITINVPL EEECCCCEEEEEEECCCCCCEEEEEEHHHEEEEECCCHHHEEEEECCCCCCCCEEEEEEE KVRNDHLEYIITWYVLALVWLVGYLYWCRSKTT EECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MWRIKFIFVFAIPFSIMITLGTWQVFRLKEKNIIIHNMQALPVKLSSDNLVSQRYNHVIA CEEEEEEEEEEECCEEEEEECCEEEEEEECCCEEEEECEEEEEEECCCCHHHHHCCEEEE NGSFDNDHKFFVFAGTLGYYVLQPFHLNDGRYILINKGTIADRKKELKLFDNDQRSVTGI CCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEEECCCCCCCCCEEEEEECCCCEEEEE LYCDHNKKVGWFVKNDIDDNLWFWFDIEAMIKTVNIPLESCIIWANDTVDSNGITINVPL EEECCCCEEEEEEECCCCCCEEEEEEHHHEEEEECCCHHHEEEEECCCCCCCCEEEEEEE KVRNDHLEYIITWYVLALVWLVGYLYWCRSKTT EECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11557893 [H]