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The map label for this gene is yhcM [H]

Identifier: 54295499

GI number: 54295499

Start: 2953568

End: 2954650

Strand: Reverse

Name: yhcM [H]

Synonym: lpl2586

Alternate gene names: 54295499

Gene position: 2954650-2953568 (Counterclockwise)

Preceding gene: 54295500

Following gene: 54295498

Centisome position: 88.31

GC content: 37.86

Gene sequence:

>1083_bases
ATGAGTTTGATTGAGCAGTATGAAGCCGCGATTTATAGAGGTGAAATAGATAGCGATCCTGAGCAGAGAGAAATCCTTGA
ACACATGCAGAGGCTTGCTGAGGATTTGCAGAAGAAGAGTGACTCTTGGTTTCCCTGGAGAAAAAAGCCCCCCATTAAAG
GGCTTTATATCTATGGGCCTGTGGGAGTTGGCAAGACTTATTTGGTGGATTTGTTTTATCAGCATATTGATGAGGAAAAA
AAGGCGAGATTTCATTTCCATCATTTTATGCAGCAAATTGATGCTCAATTAAGACGATTACAAGGCAAAAAAAATCCTTT
GCAGTATATCGCCAAAGAAATGGCCAAATCGATTCGTTTACTGTGTTTTGATGAGTTTTTAGTTCACGATGTGGCGTATG
CAATGATTTTGGCTGAATTATTACAAGCACTGCATCACTACGGCGTTGTTTTGGTTGTTTCTTCGAATACTCGTCCGGAT
GAGTTGTATTTAAATGGGGTGCATAGAGAGAGATTTATTCCGGCTATCGAGATTATTAAAAAAAATTGTGAGGTTCTGAA
TCTTAATCAAAAACGAGATTATCGTTTAGGTCGACAACCCTTGTTAGAGGCTTATTTATATCCTTTAAATGAGCAAACAC
AAGAAGCAATGGAAAAACAGTTTGCTCTAATAACCCGGGAAGAAGACTGCAAAGGTTTTATAACAGTACAAAATCGTGAT
ATTCCATATATTAAATACGGGGCAAAGTCTATTTGGTTTGCTTTTGATGTGATTTGTAATTTTCCTCGTAGCCAATTGGA
TTATTTAGAAATTGCTGATCGCTTTGATAATGTCTTCCTGAGTAATGTTTATCAGCTTACTGAAAGTCACACAGCACAAG
CGATTATGTTTATTCACTTTATAGATGTTATGTATGATAGAGGCATTAAGCTCATTATCTCAGCGGATGTTCCTGCAGAA
GAATTGTACGTTAAAGGTGAAATGAAGGAAACGTTTAAAAGAACGTTGAGCCGTCTAATTGAGATGCAATCGGTGGACTA
TCTGAGTCGTCATCCTCGGCGTTTGGTAAAGGAAATGCTGTAA

Upstream 100 bases:

>100_bases
CAGTCATTGAATTTGTTGAAACAGGTCATTTTTTTCATGGTAAGCTTTTAATATTAAAAGAAAAACTAATGGATGCTGTT
CGTGATCAGGTTTGCCTGTT

Downstream 100 bases:

>100_bases
TGTGGTATAAAATTTCTTAATTGAGAATGATTCTCGATATCATTTGTGCTAAAATTAATTAAATGAATCACCGTGTTGTT
TATATATTATGCAGATTAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MSLIEQYEAAIYRGEIDSDPEQREILEHMQRLAEDLQKKSDSWFPWRKKPPIKGLYIYGPVGVGKTYLVDLFYQHIDEEK
KARFHFHHFMQQIDAQLRRLQGKKNPLQYIAKEMAKSIRLLCFDEFLVHDVAYAMILAELLQALHHYGVVLVVSSNTRPD
ELYLNGVHRERFIPAIEIIKKNCEVLNLNQKRDYRLGRQPLLEAYLYPLNEQTQEAMEKQFALITREEDCKGFITVQNRD
IPYIKYGAKSIWFAFDVICNFPRSQLDYLEIADRFDNVFLSNVYQLTESHTAQAIMFIHFIDVMYDRGIKLIISADVPAE
ELYVKGEMKETFKRTLSRLIEMQSVDYLSRHPRRLVKEML

Sequences:

>Translated_360_residues
MSLIEQYEAAIYRGEIDSDPEQREILEHMQRLAEDLQKKSDSWFPWRKKPPIKGLYIYGPVGVGKTYLVDLFYQHIDEEK
KARFHFHHFMQQIDAQLRRLQGKKNPLQYIAKEMAKSIRLLCFDEFLVHDVAYAMILAELLQALHHYGVVLVVSSNTRPD
ELYLNGVHRERFIPAIEIIKKNCEVLNLNQKRDYRLGRQPLLEAYLYPLNEQTQEAMEKQFALITREEDCKGFITVQNRD
IPYIKYGAKSIWFAFDVICNFPRSQLDYLEIADRFDNVFLSNVYQLTESHTAQAIMFIHFIDVMYDRGIKLIISADVPAE
ELYVKGEMKETFKRTLSRLIEMQSVDYLSRHPRRLVKEML
>Mature_359_residues
SLIEQYEAAIYRGEIDSDPEQREILEHMQRLAEDLQKKSDSWFPWRKKPPIKGLYIYGPVGVGKTYLVDLFYQHIDEEKK
ARFHFHHFMQQIDAQLRRLQGKKNPLQYIAKEMAKSIRLLCFDEFLVHDVAYAMILAELLQALHHYGVVLVVSSNTRPDE
LYLNGVHRERFIPAIEIIKKNCEVLNLNQKRDYRLGRQPLLEAYLYPLNEQTQEAMEKQFALITREEDCKGFITVQNRDI
PYIKYGAKSIWFAFDVICNFPRSQLDYLEIADRFDNVFLSNVYQLTESHTAQAIMFIHFIDVMYDRGIKLIISADVPAEE
LYVKGEMKETFKRTLSRLIEMQSVDYLSRHPRRLVKEML

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=404, Percent_Identity=32.4257425742574, Blast_Score=203, Evalue=2e-52,
Organism=Escherichia coli, GI1789627, Length=341, Percent_Identity=38.7096774193548, Blast_Score=247, Evalue=9e-67,
Organism=Caenorhabditis elegans, GI17505769, Length=355, Percent_Identity=30.4225352112676, Blast_Score=159, Evalue=2e-39,
Organism=Saccharomyces cerevisiae, GI6320783, Length=317, Percent_Identity=34.7003154574132, Blast_Score=164, Evalue=2e-41,
Organism=Drosophila melanogaster, GI20129913, Length=344, Percent_Identity=30.8139534883721, Blast_Score=159, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42611; Mature: 42480

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLIEQYEAAIYRGEIDSDPEQREILEHMQRLAEDLQKKSDSWFPWRKKPPIKGLYIYGP
CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEC
VGVGKTYLVDLFYQHIDEEKKARFHFHHFMQQIDAQLRRLQGKKNPLQYIAKEMAKSIRL
CCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LCFDEFLVHDVAYAMILAELLQALHHYGVVLVVSSNTRPDELYLNGVHRERFIPAIEIIK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHH
KNCEVLNLNQKRDYRLGRQPLLEAYLYPLNEQTQEAMEKQFALITREEDCKGFITVQNRD
CCCCEEECCCHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
IPYIKYGAKSIWFAFDVICNFPRSQLDYLEIADRFDNVFLSNVYQLTESHTAQAIMFIHF
CCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDVMYDRGIKLIISADVPAEELYVKGEMKETFKRTLSRLIEMQSVDYLSRHPRRLVKEML
HHHHHHCCEEEEEECCCCHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHC
>Mature Secondary Structure 
SLIEQYEAAIYRGEIDSDPEQREILEHMQRLAEDLQKKSDSWFPWRKKPPIKGLYIYGP
CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEC
VGVGKTYLVDLFYQHIDEEKKARFHFHHFMQQIDAQLRRLQGKKNPLQYIAKEMAKSIRL
CCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LCFDEFLVHDVAYAMILAELLQALHHYGVVLVVSSNTRPDELYLNGVHRERFIPAIEIIK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHH
KNCEVLNLNQKRDYRLGRQPLLEAYLYPLNEQTQEAMEKQFALITREEDCKGFITVQNRD
CCCCEEECCCHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
IPYIKYGAKSIWFAFDVICNFPRSQLDYLEIADRFDNVFLSNVYQLTESHTAQAIMFIHF
CCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDVMYDRGIKLIISADVPAEELYVKGEMKETFKRTLSRLIEMQSVDYLSRHPRRLVKEML
HHHHHHCCEEEEEECCCCHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]