Click here to switch to the map view.

The map label for this gene is 54295500

Identifier: 54295500

GI number: 54295500

Start: 2954647

End: 2955309

Strand: Reverse

Name: 54295500

Synonym: lpl2587

Alternate gene names: NA

Gene position: 2955309-2954647 (Counterclockwise)

Preceding gene: 54295504

Following gene: 54295499

Centisome position: 88.33

GC content: 42.84

Gene sequence:

>663_bases
ATGCTATTTACCGACAAATTAAATACTCCCGGAGAGCATGAATTAATGCTTGAAGGATTAGTTGGCCCACTGGAAGCCGT
ACTGACTGTTCCTGAAGATGCGGATACTCGCTATGTTGCTTTTCTTGGTCATCCACATTCTTTACAAGGTGGGACAATGA
ATAACAAAGTAGTTACCACGATGGCCAGAGCTTTTAAGGAATTGCATATTCCTTCAGTACGGTTTAATTTCAGAGGTGTA
GGGCGGTCTGGAGGCCATTATGATAAGGGTATTGGCGAGAGTGAAGATATGCGCAAGCTCGTGAGGCAGTGGCATTCTGA
GCAACCGCAAGCCCAAAATATTTTTGCGGGCTTTTCTTTCGGATCTTATGTGGCTTATAGAACGGCGTCTCATTGTGAGC
ATGCTCTGTTAATAACGATAGCCCCTCCTGTGCATCATTATGATTACAAAGAATTTGAGCCACCTCCTCATCCCTGGCTT
ATTATACAAGGCACAGAAGATGAGGTTGTGCCATTTGAACTGGTGAGTGAGTTCGCCAGCCAATCATCGCAGGTATTGCC
AGTCATTGAATTTGTTGAAACAGGTCATTTTTTTCATGGTAAGCTTTTAATATTAAAAGAAAAACTAATGGATGCTGTTC
GTGATCAGGTTTGCCTGTTATGA

Upstream 100 bases:

>100_bases
GGTCTATTGGGGGTCAACGCATCCATTGCTATAATAGCCTAATTCTTTTGCTTAAATCCATATTGATTTGGGTTATTATC
TTTAAATTGGCAGGGTTGTT

Downstream 100 bases:

>100_bases
GTTTGATTGAGCAGTATGAAGCCGCGATTTATAGAGGTGAAATAGATAGCGATCCTGAGCAGAGAGAAATCCTTGAACAC
ATGCAGAGGCTTGCTGAGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MLFTDKLNTPGEHELMLEGLVGPLEAVLTVPEDADTRYVAFLGHPHSLQGGTMNNKVVTTMARAFKELHIPSVRFNFRGV
GRSGGHYDKGIGESEDMRKLVRQWHSEQPQAQNIFAGFSFGSYVAYRTASHCEHALLITIAPPVHHYDYKEFEPPPHPWL
IIQGTEDEVVPFELVSEFASQSSQVLPVIEFVETGHFFHGKLLILKEKLMDAVRDQVCLL

Sequences:

>Translated_220_residues
MLFTDKLNTPGEHELMLEGLVGPLEAVLTVPEDADTRYVAFLGHPHSLQGGTMNNKVVTTMARAFKELHIPSVRFNFRGV
GRSGGHYDKGIGESEDMRKLVRQWHSEQPQAQNIFAGFSFGSYVAYRTASHCEHALLITIAPPVHHYDYKEFEPPPHPWL
IIQGTEDEVVPFELVSEFASQSSQVLPVIEFVETGHFFHGKLLILKEKLMDAVRDQVCLL
>Mature_220_residues
MLFTDKLNTPGEHELMLEGLVGPLEAVLTVPEDADTRYVAFLGHPHSLQGGTMNNKVVTTMARAFKELHIPSVRFNFRGV
GRSGGHYDKGIGESEDMRKLVRQWHSEQPQAQNIFAGFSFGSYVAYRTASHCEHALLITIAPPVHHYDYKEFEPPPHPWL
IIQGTEDEVVPFELVSEFASQSSQVLPVIEFVETGHFFHGKLLILKEKLMDAVRDQVCLL

Specific function: Unknown

COG id: COG2945

COG function: function code R; Predicted hydrolase of the alpha/beta superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000383 [H]

Pfam domain/function: PF02129 Peptidase_S15 [H]

EC number: NA

Molecular weight: Translated: 24781; Mature: 24781

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFTDKLNTPGEHELMLEGLVGPLEAVLTVPEDADTRYVAFLGHPHSLQGGTMNNKVVTT
CEECCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCEEEEECCCCCCCCCCCCCHHHHH
MARAFKELHIPSVRFNFRGVGRSGGHYDKGIGESEDMRKLVRQWHSEQPQAQNIFAGFSF
HHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHEEEECCC
GSYVAYRTASHCEHALLITIAPPVHHYDYKEFEPPPHPWLIIQGTEDEVVPFELVSEFAS
HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHH
QSSQVLPVIEFVETGHFFHGKLLILKEKLMDAVRDQVCLL
CCCCCCHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLFTDKLNTPGEHELMLEGLVGPLEAVLTVPEDADTRYVAFLGHPHSLQGGTMNNKVVTT
CEECCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCEEEEECCCCCCCCCCCCCHHHHH
MARAFKELHIPSVRFNFRGVGRSGGHYDKGIGESEDMRKLVRQWHSEQPQAQNIFAGFSF
HHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHEEEECCC
GSYVAYRTASHCEHALLITIAPPVHHYDYKEFEPPPHPWLIIQGTEDEVVPFELVSEFAS
HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHH
QSSQVLPVIEFVETGHFFHGKLLILKEKLMDAVRDQVCLL
CCCCCCHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]