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The map label for this gene is sdeD

Identifier: 54295346

GI number: 54295346

Start: 2766408

End: 2767556

Strand: Reverse

Name: sdeD

Synonym: lpl2431

Alternate gene names: NA

Gene position: 2767556-2766408 (Counterclockwise)

Preceding gene: 54295349

Following gene: 54295345

Centisome position: 82.72

GC content: 42.12

Gene sequence:

>1149_bases
GTGCCTATTATTCTAGATTCTGATGTGTTGGAAGTGGCGGAATATGTGTATAAAACACGCTTATCTCAGCCTTACACTGA
AGTGGGTTCTGAATGGGAGTATAATTACAAGAATCCAACAGCCACTTTTGCAAAAGGCGATGGCCATAACTTGCAAAGGT
ATATTACAATTGATGGCAAGCAGCTTCATCGCCCTATCCATGGCTTAGCTCATACGATGCGCACATTGATGTATAGCCAA
TTGATGTATTGCTCCTCAAAAAAACAACTTTCCCCACACGTATGTCAAGACGGACGAACAATAGCCGATCTCAGTGAACT
TGATCTTAAAAAGATAAACATTGCGCAGCTATTTTTTGTAGCCGGGCGCGAAAGCGAGGCTTCTTATGGTGATGCTTATC
ATCGTTATCATCTGTATGGGGCTAAACAGTTCGAAGAATATGCCCGCAAGCATTTGACTCATCTTTTCTCGGAAGAAGAA
ATCCAATTGTACTCACGATGTATAGAAGACAGGGTAGGTGACAGTTTTGATGGGACTCCTGAAGGTTATATAATTCACTT
GTCACACATGATCGATTTGATGCGTTGCAAAAGCCCGGTTGAAGTATTTTTGGGCCACTCAAAAGGGGTTTCTGGTATTG
TACCTACATTGATTCACTTGTTTGGCAAACAAGATGGCTTGGATATTATGCATTACGCCCGAGGCTTGTTTGCGGCTACA
GGTGAGGCGGTGCCCTATATTGATTCATCTGAATGGTCTCATTTGGGAGTTGACTTGAGTCGGGTACAACGCGCACACTC
TATCGTTGGTGATATCAATGTCCCTGGGCAAGAGGCTGATTCTAAAAAAACAGCGCAAGCCGGTTTTTCTGTGGATGGTT
GTTATTCTGCGTTAACCAGTGTGCCTACACCTTCCTGGTATGAGAAAGAGTTAAAGGAAATCGATGATGAAAAAATCGAT
GTTAAGGAAGTTGATGATAGGGAGATAGAAAAAGAACATGAGATAGTTGTTCCTTCGCAGGCAACAACACCTTTAAGTAC
AGTAAAAACTGACTCCTTTGTCGAAAAACTTCTGAAGCCATTTATGATTTGGAAAAAGCCAGAGGTACAAACGACTCAAC
CAACAACGGAGAAGACTAATAAACCTTAG

Upstream 100 bases:

>100_bases
ATCATTGCAATTTTTTGGTTTATACCTATTGCAATGAATTGATAAATAATTACACTTGTTATATAATAAATCCTCATTTT
GTTTATGGAAGGAGACCATT

Downstream 100 bases:

>100_bases
CCTGTTTTATTTAAAGTAATAGAGAAACGGATTCTCCTAGGGAATTAAAACGCAATGAGGTGTTGTAACTATGTTTAGTT
ATCTGGATAAATTATTAGAT

Product: SdeD protein (substrate of the Dot/Icm system)

Products: NA

Alternate protein names: Sid -Like Protein; Sid Related Protein-Like; Sid Proteins; SdeA Protein; SdeC Protein; SidE Protein

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MPIILDSDVLEVAEYVYKTRLSQPYTEVGSEWEYNYKNPTATFAKGDGHNLQRYITIDGKQLHRPIHGLAHTMRTLMYSQ
LMYCSSKKQLSPHVCQDGRTIADLSELDLKKINIAQLFFVAGRESEASYGDAYHRYHLYGAKQFEEYARKHLTHLFSEEE
IQLYSRCIEDRVGDSFDGTPEGYIIHLSHMIDLMRCKSPVEVFLGHSKGVSGIVPTLIHLFGKQDGLDIMHYARGLFAAT
GEAVPYIDSSEWSHLGVDLSRVQRAHSIVGDINVPGQEADSKKTAQAGFSVDGCYSALTSVPTPSWYEKELKEIDDEKID
VKEVDDREIEKEHEIVVPSQATTPLSTVKTDSFVEKLLKPFMIWKKPEVQTTQPTTEKTNKP

Sequences:

>Translated_382_residues
MPIILDSDVLEVAEYVYKTRLSQPYTEVGSEWEYNYKNPTATFAKGDGHNLQRYITIDGKQLHRPIHGLAHTMRTLMYSQ
LMYCSSKKQLSPHVCQDGRTIADLSELDLKKINIAQLFFVAGRESEASYGDAYHRYHLYGAKQFEEYARKHLTHLFSEEE
IQLYSRCIEDRVGDSFDGTPEGYIIHLSHMIDLMRCKSPVEVFLGHSKGVSGIVPTLIHLFGKQDGLDIMHYARGLFAAT
GEAVPYIDSSEWSHLGVDLSRVQRAHSIVGDINVPGQEADSKKTAQAGFSVDGCYSALTSVPTPSWYEKELKEIDDEKID
VKEVDDREIEKEHEIVVPSQATTPLSTVKTDSFVEKLLKPFMIWKKPEVQTTQPTTEKTNKP
>Mature_381_residues
PIILDSDVLEVAEYVYKTRLSQPYTEVGSEWEYNYKNPTATFAKGDGHNLQRYITIDGKQLHRPIHGLAHTMRTLMYSQL
MYCSSKKQLSPHVCQDGRTIADLSELDLKKINIAQLFFVAGRESEASYGDAYHRYHLYGAKQFEEYARKHLTHLFSEEEI
QLYSRCIEDRVGDSFDGTPEGYIIHLSHMIDLMRCKSPVEVFLGHSKGVSGIVPTLIHLFGKQDGLDIMHYARGLFAATG
EAVPYIDSSEWSHLGVDLSRVQRAHSIVGDINVPGQEADSKKTAQAGFSVDGCYSALTSVPTPSWYEKELKEIDDEKIDV
KEVDDREIEKEHEIVVPSQATTPLSTVKTDSFVEKLLKPFMIWKKPEVQTTQPTTEKTNKP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43295; Mature: 43164

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIILDSDVLEVAEYVYKTRLSQPYTEVGSEWEYNYKNPTATFAKGDGHNLQRYITIDGK
CCEEECCHHHHHHHHHHHHHCCCCHHHCCCCCEECCCCCCCEEECCCCCCEEEEEEECHH
QLHRPIHGLAHTMRTLMYSQLMYCSSKKQLSPHVCQDGRTIADLSELDLKKINIAQLFFV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCEEHHHHHHHHHHCCHHHEEEE
AGRESEASYGDAYHRYHLYGAKQFEEYARKHLTHLFSEEEIQLYSRCIEDRVGDSFDGTP
ECCCCCCCCCCHHHHEEECCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCC
EGYIIHLSHMIDLMRCKSPVEVFLGHSKGVSGIVPTLIHLFGKQDGLDIMHYARGLFAAT
CCEEEEHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
GEAVPYIDSSEWSHLGVDLSRVQRAHSIVGDINVPGQEADSKKTAQAGFSVDGCYSALTS
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHC
VPTPSWYEKELKEIDDEKIDVKEVDDREIEKEHEIVVPSQATTPLSTVKTDSFVEKLLKP
CCCCHHHHHHHHHCCCCCCCHHCCCCHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHH
FMIWKKPEVQTTQPTTEKTNKP
HHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PIILDSDVLEVAEYVYKTRLSQPYTEVGSEWEYNYKNPTATFAKGDGHNLQRYITIDGK
CEEECCHHHHHHHHHHHHHCCCCHHHCCCCCEECCCCCCCEEECCCCCCEEEEEEECHH
QLHRPIHGLAHTMRTLMYSQLMYCSSKKQLSPHVCQDGRTIADLSELDLKKINIAQLFFV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCEEHHHHHHHHHHCCHHHEEEE
AGRESEASYGDAYHRYHLYGAKQFEEYARKHLTHLFSEEEIQLYSRCIEDRVGDSFDGTP
ECCCCCCCCCCHHHHEEECCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCC
EGYIIHLSHMIDLMRCKSPVEVFLGHSKGVSGIVPTLIHLFGKQDGLDIMHYARGLFAAT
CCEEEEHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
GEAVPYIDSSEWSHLGVDLSRVQRAHSIVGDINVPGQEADSKKTAQAGFSVDGCYSALTS
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHC
VPTPSWYEKELKEIDDEKIDVKEVDDREIEKEHEIVVPSQATTPLSTVKTDSFVEKLLKP
CCCCHHHHHHHHHCCCCCCCHHCCCCHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHH
FMIWKKPEVQTTQPTTEKTNKP
HHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA