Click here to switch to the map view.

The map label for this gene is lspI [H]

Identifier: 54294246

GI number: 54294246

Start: 1468037

End: 1468414

Strand: Reverse

Name: lspI [H]

Synonym: lpl1311

Alternate gene names: 54294246

Gene position: 1468414-1468037 (Counterclockwise)

Preceding gene: 54294247

Following gene: 54294245

Centisome position: 43.89

GC content: 40.48

Gene sequence:

>378_bases
ATGATGCCGAAAACTAAACTAGTATCCGGATTTACTTTGATAGAAGTCTTATTGGCTCTTACTGTCATTGCAATTGCTTT
AACAGCGCTTTTAAAAGCAACCGCTCAAAATATAGACAACACGCATAGAATTAAAGAAAAAACAATAAGTCATTGGGTAG
CAATGCAAGGGATAGCGATGATCCAATTAAATCTGCTGCGCACTTCTCAAAGCCAAGAATCAACGCAAGCAACCACCATG
CTGGGACAAAAGTGGTACTGGAGAGCTAAAATTAGCCCGACCCCTATAAAACGAATGCAACAGATAACCATTTCAGTCAG
TTCCAAACAAGCAGGTCCCTTTCGAGAAGAACTCATTGCATTCAGGTACTTGCCATGA

Upstream 100 bases:

>100_bases
CCCCTTTTACTATAGAATTTGGCACAGATAAGGAAAAATGGATAGCCAAACTTACAGGCAGCCATAATGGTGATTTGGAT
TTTACCATGACAAAATCTCA

Downstream 100 bases:

>100_bases
TTAAAAATAAAGGATTTACACTGATTGAGATATTAATTGCTCTTACTGTTTTTGCTATATTAGCAACTATTACCTCCTCA
ACCTTATACTACGCATTCAA

Product: type II secretory pathway protein LspI

Products: NA

Alternate protein names: PilD-dependent protein pddC [H]

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MMPKTKLVSGFTLIEVLLALTVIAIALTALLKATAQNIDNTHRIKEKTISHWVAMQGIAMIQLNLLRTSQSQESTQATTM
LGQKWYWRAKISPTPIKRMQQITISVSSKQAGPFREELIAFRYLP

Sequences:

>Translated_125_residues
MMPKTKLVSGFTLIEVLLALTVIAIALTALLKATAQNIDNTHRIKEKTISHWVAMQGIAMIQLNLLRTSQSQESTQATTM
LGQKWYWRAKISPTPIKRMQQITISVSSKQAGPFREELIAFRYLP
>Mature_125_residues
MMPKTKLVSGFTLIEVLLALTVIAIALTALLKATAQNIDNTHRIKEKTISHWVAMQGIAMIQLNLLRTSQSQESTQATTM
LGQKWYWRAKISPTPIKRMQQITISVSSKQAGPFREELIAFRYLP

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins. Required for the translocation of a variety of enzymes across the outer membrane [H]

COG id: COG2165

COG function: function code NU; Type II secretory pathway, pseudopilin PulG

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP I family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010052
- InterPro:   IPR012902
- InterPro:   IPR001120
- InterPro:   IPR003413 [H]

Pfam domain/function: PF02501 GSPII_IJ; PF07963 N_methyl [H]

EC number: NA

Molecular weight: Translated: 14097; Mature: 14097

Theoretical pI: Translated: 11.09; Mature: 11.09

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPKTKLVSGFTLIEVLLALTVIAIALTALLKATAQNIDNTHRIKEKTISHWVAMQGIAM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
IQLNLLRTSQSQESTQATTMLGQKWYWRAKISPTPIKRMQQITISVSSKQAGPFREELIA
HHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHEECCCCCCCHHHHHHH
FRYLP
HHCCC
>Mature Secondary Structure
MMPKTKLVSGFTLIEVLLALTVIAIALTALLKATAQNIDNTHRIKEKTISHWVAMQGIAM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
IQLNLLRTSQSQESTQATTMLGQKWYWRAKISPTPIKRMQQITISVSSKQAGPFREELIA
HHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHEECCCCCCCHHHHHHH
FRYLP
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1588814; 1309616; 10984043 [H]