Click here to switch to the map view.

The map label for this gene is lspH [H]

Identifier: 54294247

GI number: 54294247

Start: 1468411

End: 1468896

Strand: Reverse

Name: lspH [H]

Synonym: lpl1312

Alternate gene names: 54294247

Gene position: 1468896-1468411 (Counterclockwise)

Preceding gene: 54294248

Following gene: 54294246

Centisome position: 43.9

GC content: 38.48

Gene sequence:

>486_bases
ATGACCACTCATAAGGGTTTTACCCTGATAGAAATTCTTATTGTCATAGTGATTATAGGTATAACCTTGGGGTTTGCCTT
AATCGCTTTTGGTGATTTCGGGGAAAGCAGACGTATACAATTTTCAGCTGAACAATTGGCAAATACCCTAAGCCTGGCTC
AACAACAAGCCATTTTAGAAAGCAGTACCCTTGGGTTAAAAATAGATAATAGCAGTTACCAAATTCTTAAGTTTCAGGAC
CAGGCGGGATGGAATCCCATATCGAACAAAGGAATTTTTAAACTCTACTATTTTCCCAAAAACGTTGTGATTAGCCTTAA
AACAAATCTAAAACATAGCCGGGGGAACCCTGCAATCATAATAGCGCCATCTGGTGACATGACCCCTTTTACTATAGAAT
TTGGCACAGATAAGGAAAAATGGATAGCCAAACTTACAGGCAGCCATAATGGTGATTTGGATTTTACCATGACAAAATCT
CAATGA

Upstream 100 bases:

>100_bases
TATTTAAACCCAGGACAACATACTGACGTTGATGTCTTTACTTATGGAGCAGCAGGACAACCTGGCGGAACAGGGATTAA
TGCGGAGATTGGTAACTGGG

Downstream 100 bases:

>100_bases
TGCCGAAAACTAAACTAGTATCCGGATTTACTTTGATAGAAGTCTTATTGGCTCTTACTGTCATTGCAATTGCTTTAACA
GCGCTTTTAAAAGCAACCGC

Product: type II secretory pathway protein LspH

Products: NA

Alternate protein names: PilD-dependent protein pddB [H]

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MTTHKGFTLIEILIVIVIIGITLGFALIAFGDFGESRRIQFSAEQLANTLSLAQQQAILESSTLGLKIDNSSYQILKFQD
QAGWNPISNKGIFKLYYFPKNVVISLKTNLKHSRGNPAIIIAPSGDMTPFTIEFGTDKEKWIAKLTGSHNGDLDFTMTKS
Q

Sequences:

>Translated_161_residues
MTTHKGFTLIEILIVIVIIGITLGFALIAFGDFGESRRIQFSAEQLANTLSLAQQQAILESSTLGLKIDNSSYQILKFQD
QAGWNPISNKGIFKLYYFPKNVVISLKTNLKHSRGNPAIIIAPSGDMTPFTIEFGTDKEKWIAKLTGSHNGDLDFTMTKS
Q
>Mature_160_residues
TTHKGFTLIEILIVIVIIGITLGFALIAFGDFGESRRIQFSAEQLANTLSLAQQQAILESSTLGLKIDNSSYQILKFQDQ
AGWNPISNKGIFKLYYFPKNVVISLKTNLKHSRGNPAIIIAPSGDMTPFTIEFGTDKEKWIAKLTGSHNGDLDFTMTKSQ

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins. Required for the translocation of a variety of enzymes across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP H family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002416
- InterPro:   IPR012902
- InterPro:   IPR001120
- InterPro:   IPR022346 [H]

Pfam domain/function: PF12019 GspH; PF07963 N_methyl [H]

EC number: NA

Molecular weight: Translated: 17812; Mature: 17681

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTHKGFTLIEILIVIVIIGITLGFALIAFGDFGESRRIQFSAEQLANTLSLAQQQAILE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHC
SSTLGLKIDNSSYQILKFQDQAGWNPISNKGIFKLYYFPKNVVISLKTNLKHSRGNPAII
CCCEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCEEE
IAPSGDMTPFTIEFGTDKEKWIAKLTGSHNGDLDFTMTKSQ
EECCCCCCEEEEEECCCHHHHHEEECCCCCCCEEEEEECCC
>Mature Secondary Structure 
TTHKGFTLIEILIVIVIIGITLGFALIAFGDFGESRRIQFSAEQLANTLSLAQQQAILE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHC
SSTLGLKIDNSSYQILKFQDQAGWNPISNKGIFKLYYFPKNVVISLKTNLKHSRGNPAII
CCCEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCEEE
IAPSGDMTPFTIEFGTDKEKWIAKLTGSHNGDLDFTMTKSQ
EECCCCCCEEEEEECCCHHHHHEEECCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1588814; 1309616; 10984043 [H]