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The map label for this gene is lspJ [H]

Identifier: 54294245

GI number: 54294245

Start: 1467423

End: 1468040

Strand: Reverse

Name: lspJ [H]

Synonym: lpl1310

Alternate gene names: 54294245

Gene position: 1468040-1467423 (Counterclockwise)

Preceding gene: 54294246

Following gene: 54294244

Centisome position: 43.88

GC content: 39.32

Gene sequence:

>618_bases
ATGATTAAAAATAAAGGATTTACACTGATTGAGATATTAATTGCTCTTACTGTTTTTGCTATATTAGCAACTATTACCTC
CTCAACCTTATACTACGCATTCAATACTCGAACTCGAGTTAACGCGCAGGCTGAACGCTTAAATGCACTGCAGCTGGCAA
TAAGTATCATTCAACAAGATACTTCCCAAACAGTGGAACGTGCTATAAGAGGTAATGAAATGCGCCTGTTTCCAATATTT
GTTGGTCAACCCCAATACCTTGAACTCACCAGGGATGGGGTAGTAAACCCCAATAGTGCTGAAAAACGCAGTACCTTGGA
ACGAGTCGCGCTTGTTTGCCAGGATAGCAAATTACTGCGCCGCACATGGAATACTTTAGATCCTATAGACAGAAATATCT
ATAAAGACAAAGTACTTCTGGATAATTTGTCTGAATGTCATTTCAACTATTTAAATCAAAATTTACAGCTTCTCTCCGAG
TGGCGAGAACAGGCAGTCAATCAAAATCAGCAAAGAGAACCTCTTCCCAAAGCAATCCAAATGAATCTCACTTTAAAGGA
CTGGGGAGATATGAACATGCTTTTTATCATACCCGGAGCACTCTATGTTTATGAGTAG

Upstream 100 bases:

>100_bases
GCCCGACCCCTATAAAACGAATGCAACAGATAACCATTTCAGTCAGTTCCAAACAAGCAGGTCCCTTTCGAGAAGAACTC
ATTGCATTCAGGTACTTGCC

Downstream 100 bases:

>100_bases
CCCACCTTCAAAATCCATTGCCAGTTCTAAAATGCAAGGAAGCGCTCTTTTAACGGCTCTATTTATTATGACATTGGTTG
CTATAGTTGCCACTGCCATG

Product: type II secretory pathway protein LspJ

Products: NA

Alternate protein names: PilD-dependent protein pddD [H]

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MIKNKGFTLIEILIALTVFAILATITSSTLYYAFNTRTRVNAQAERLNALQLAISIIQQDTSQTVERAIRGNEMRLFPIF
VGQPQYLELTRDGVVNPNSAEKRSTLERVALVCQDSKLLRRTWNTLDPIDRNIYKDKVLLDNLSECHFNYLNQNLQLLSE
WREQAVNQNQQREPLPKAIQMNLTLKDWGDMNMLFIIPGALYVYE

Sequences:

>Translated_205_residues
MIKNKGFTLIEILIALTVFAILATITSSTLYYAFNTRTRVNAQAERLNALQLAISIIQQDTSQTVERAIRGNEMRLFPIF
VGQPQYLELTRDGVVNPNSAEKRSTLERVALVCQDSKLLRRTWNTLDPIDRNIYKDKVLLDNLSECHFNYLNQNLQLLSE
WREQAVNQNQQREPLPKAIQMNLTLKDWGDMNMLFIIPGALYVYE
>Mature_205_residues
MIKNKGFTLIEILIALTVFAILATITSSTLYYAFNTRTRVNAQAERLNALQLAISIIQQDTSQTVERAIRGNEMRLFPIF
VGQPQYLELTRDGVVNPNSAEKRSTLERVALVCQDSKLLRRTWNTLDPIDRNIYKDKVLLDNLSECHFNYLNQNLQLLSE
WREQAVNQNQQREPLPKAIQMNLTLKDWGDMNMLFIIPGALYVYE

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins. Required for the translocation of a variety of enzymes across the outer membrane [H]

COG id: COG4795

COG function: function code U; Type II secretory pathway, component PulJ

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP J family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010055
- InterPro:   IPR012902
- InterPro:   IPR001120 [H]

Pfam domain/function: PF07963 N_methyl [H]

EC number: NA

Molecular weight: Translated: 23694; Mature: 23694

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKNKGFTLIEILIALTVFAILATITSSTLYYAFNTRTRVNAQAERLNALQLAISIIQQD
CCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEECCHHHHHHHHHHHHHHHHHHH
TSQTVERAIRGNEMRLFPIFVGQPQYLELTRDGVVNPNSAEKRSTLERVALVCQDSKLLR
HHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHH
RTWNTLDPIDRNIYKDKVLLDNLSECHFNYLNQNLQLLSEWREQAVNQNQQREPLPKAIQ
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHE
MNLTLKDWGDMNMLFIIPGALYVYE
EEEEEECCCCCEEEEEECCEEEEEC
>Mature Secondary Structure
MIKNKGFTLIEILIALTVFAILATITSSTLYYAFNTRTRVNAQAERLNALQLAISIIQQD
CCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEECCHHHHHHHHHHHHHHHHHHH
TSQTVERAIRGNEMRLFPIFVGQPQYLELTRDGVVNPNSAEKRSTLERVALVCQDSKLLR
HHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHH
RTWNTLDPIDRNIYKDKVLLDNLSECHFNYLNQNLQLLSEWREQAVNQNQQREPLPKAIQ
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHE
MNLTLKDWGDMNMLFIIPGALYVYE
EEEEEECCCCCEEEEEECCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1588814; 1309616; 10984043 [H]