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The map label for this gene is qseB [H]

Identifier: 54294190

GI number: 54294190

Start: 1396316

End: 1396993

Strand: Reverse

Name: qseB [H]

Synonym: lpl1254

Alternate gene names: 54294190

Gene position: 1396993-1396316 (Counterclockwise)

Preceding gene: 54294191

Following gene: 54294189

Centisome position: 41.76

GC content: 39.09

Gene sequence:

>678_bases
ATGAGATTATTACTTGTTGAAGACGATGAACTGCTTGGCGATGCAGTAAAAGCCGGACTGACACAATTTGGTTATGTTGT
TGACTGGCTAAAAGATGGCGAAGCTGCTCGGGCGGCTCTCAAATCAGAGTCTTTTGAATTAATTATTCTTGACTTGGGAT
TACCTAAATTATCCGGTTTATCATTATTGCAAAACATCAGACATGATGGAAATAGCACACCTGTGATTATTCTTACAGCT
CGAGAATCAATAGAAGATCGGGTGAAAGGCTTAGATAGCGGTGCTGACGATTATCTTATTAAACCTTTTGATTTAAACGA
ATTAAGTGCAAGGATTAGAGCATTGGTAAGACGCTCTCAGGGCAGAGCTGATTCCGTGTTGCAATATAAAAATATTACCC
TCGATCCTGCGGCTCATTCTGTATTCGTGGATGATGTACTCGTCAATGTTCCAAGAAGAGAATTTGCTCTATTGCAGAAA
TTACTTGAAAACAGTGGCCAGGTTTTATCTCGAGAACAATTAATGCAGAGTATTTATGGCTGGGAAGAAGACGTGGACAG
TAATGCTCTCGAAGTTCATATCCATAATTTACGTAAAAAACTTAACGCAAACTTTATCCGCACTATACGTGGTGTAGGAT
ATATGGCTGAAAAAAATGACAGTGTACTTCTATCGTGA

Upstream 100 bases:

>100_bases
AACAAAACACACAGATGAAAAAAGTTTTGAAAAACAATAGTGACATCTCTGTATCTGCAGAAAAATATAGCATGTAATAA
GAGAAAAAGTAGGAGCACCG

Downstream 100 bases:

>100_bases
AATCGTCCATTCGAAAATTTTTATTAATTAATCTGCTTCTTGCAATTACTATTACTACAACATTAACTGCTATTGGTAAC
TATTATCTTGATCAAAAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MRLLLVEDDELLGDAVKAGLTQFGYVVDWLKDGEAARAALKSESFELIILDLGLPKLSGLSLLQNIRHDGNSTPVIILTA
RESIEDRVKGLDSGADDYLIKPFDLNELSARIRALVRRSQGRADSVLQYKNITLDPAAHSVFVDDVLVNVPRREFALLQK
LLENSGQVLSREQLMQSIYGWEEDVDSNALEVHIHNLRKKLNANFIRTIRGVGYMAEKNDSVLLS

Sequences:

>Translated_225_residues
MRLLLVEDDELLGDAVKAGLTQFGYVVDWLKDGEAARAALKSESFELIILDLGLPKLSGLSLLQNIRHDGNSTPVIILTA
RESIEDRVKGLDSGADDYLIKPFDLNELSARIRALVRRSQGRADSVLQYKNITLDPAAHSVFVDDVLVNVPRREFALLQK
LLENSGQVLSREQLMQSIYGWEEDVDSNALEVHIHNLRKKLNANFIRTIRGVGYMAEKNDSVLLS
>Mature_225_residues
MRLLLVEDDELLGDAVKAGLTQFGYVVDWLKDGEAARAALKSESFELIILDLGLPKLSGLSLLQNIRHDGNSTPVIILTA
RESIEDRVKGLDSGADDYLIKPFDLNELSARIRALVRRSQGRADSVLQYKNITLDPAAHSVFVDDVLVNVPRREFALLQK
LLENSGQVLSREQLMQSIYGWEEDVDSNALEVHIHNLRKKLNANFIRTIRGVGYMAEKNDSVLLS

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=214, Percent_Identity=46.7289719626168, Blast_Score=216, Evalue=1e-57,
Organism=Escherichia coli, GI1790552, Length=220, Percent_Identity=42.7272727272727, Blast_Score=180, Evalue=7e-47,
Organism=Escherichia coli, GI87082012, Length=218, Percent_Identity=40.8256880733945, Blast_Score=167, Evalue=8e-43,
Organism=Escherichia coli, GI1786784, Length=226, Percent_Identity=37.1681415929204, Blast_Score=151, Evalue=3e-38,
Organism=Escherichia coli, GI1787375, Length=221, Percent_Identity=36.6515837104072, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI1786599, Length=220, Percent_Identity=35.9090909090909, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1790860, Length=217, Percent_Identity=35.4838709677419, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1789809, Length=226, Percent_Identity=33.1858407079646, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1786911, Length=222, Percent_Identity=34.2342342342342, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI2367329, Length=227, Percent_Identity=37.4449339207048, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1788394, Length=227, Percent_Identity=32.15859030837, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI1787229, Length=221, Percent_Identity=31.2217194570136, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI1790863, Length=226, Percent_Identity=30.0884955752212, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI145693140, Length=231, Percent_Identity=26.4069264069264, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787487, Length=119, Percent_Identity=32.7731092436975, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1790437, Length=151, Percent_Identity=29.8013245033113, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788550, Length=108, Percent_Identity=30.5555555555556, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790299, Length=148, Percent_Identity=29.7297297297297, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788521, Length=204, Percent_Identity=29.4117647058824, Blast_Score=60, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 25152; Mature: 25152

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLLVEDDELLGDAVKAGLTQFGYVVDWLKDGEAARAALKSESFELIILDLGLPKLSGL
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECCCCCCHHH
SLLQNIRHDGNSTPVIILTARESIEDRVKGLDSGADDYLIKPFDLNELSARIRALVRRSQ
HHHHHHHCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHCC
GRADSVLQYKNITLDPAAHSVFVDDVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYG
CCHHHHHHHCCCEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
WEEDVDSNALEVHIHNLRKKLNANFIRTIRGVGYMAEKNDSVLLS
CCCCCCCCCEEEHHHHHHHHHCHHHHHHHHHCCCEECCCCCEECC
>Mature Secondary Structure
MRLLLVEDDELLGDAVKAGLTQFGYVVDWLKDGEAARAALKSESFELIILDLGLPKLSGL
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECCCCCCHHH
SLLQNIRHDGNSTPVIILTARESIEDRVKGLDSGADDYLIKPFDLNELSARIRALVRRSQ
HHHHHHHCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHCC
GRADSVLQYKNITLDPAAHSVFVDDVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYG
CCHHHHHHHCCCEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
WEEDVDSNALEVHIHNLRKKLNANFIRTIRGVGYMAEKNDSVLLS
CCCCCCCCCEEEHHHHHHHHHCHHHHHHHHHCCCEECCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]