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The map label for this gene is sufC [C]

Identifier: 54293585

GI number: 54293585

Start: 688506

End: 689258

Strand: Direct

Name: sufC [C]

Synonym: lpl0637

Alternate gene names: 54293585

Gene position: 688506-689258 (Clockwise)

Preceding gene: 54293584

Following gene: 54293586

Centisome position: 20.58

GC content: 40.5

Gene sequence:

>753_bases
ATGTTAAACATTAAAGAACTCAATGTTGCTGTCAATGGACAGTCTATTTTAAAAGGTATTAATCTTGAGGTTAAACCAGG
AGAGGTTCATGCGATTATGGGACCTAATGGTTCAGGAAAAAGTACTCTCTCCAAGGTGTTGGCTGGGCATCCTTCTTATG
AAATAACTCGTGGTGATATATCCTATTTGGGACAAGATTTGTTACCTATGTCCCCGGAAGAGAGAGCGCGGGCCGGTATT
TTTATGTCTTTTCAATATCCGGTAGAAATTCCTGGTGTAACCAATATCAATTTTCTTAAAGCCTCAGTGAATGCGGTTCG
CAAAGGGCAAGGAAGAAATACCCTCGATGCCATAGAGTTTTTAAGTTTTATTCGGGAAAAATGTCAGCTTCTGGATATGG
ATGAAAGCTTTTTATACCGAAGTATTAATGAAGGATTTTCAGGTGGGGAAAAGAAACGTAATGAAATATTGCAAATGGCT
GCTTTGGAGCCCAGGCTAGCTATTCTTGATGAAACCGACTCTGGCCTGGATATCGACGCATTACGAATTATTTCTCAAGG
AGTTAATGCGATGCGCTCTCCCGGGCGTTCTATTATTTTAGTGACCCATTATCAGCGCTTACTGGATTATATTGAGCCTG
ATTTTATTCATGTCTTGGCAAATGGTCGTATTATTACGTCAGGGGATAAATCTTTGGCGCTGGAACTGGAGAAAAAAGGT
TATAGCTGGCTTGAAGAAGTGGAGCAGTTATGA

Upstream 100 bases:

>100_bases
AATGGATTTTGTAAGCAAGTTTTAAAAGAATTACCTATGGAATTTGCGGTGGAAGCCACTAAATTATTAGGTATAAGCTT
AGAAGGGGCAGTCGGCTAAT

Downstream 100 bases:

>100_bases
GTGATATTTTGGATTATTATCAACAGCAAGCCCAATCAGGCGTATCGCAAATACCCTGGCTTGCGCAGTTGCAGTCTAAA
GCATTAACTGATTTGAAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MLNIKELNVAVNGQSILKGINLEVKPGEVHAIMGPNGSGKSTLSKVLAGHPSYEITRGDISYLGQDLLPMSPEERARAGI
FMSFQYPVEIPGVTNINFLKASVNAVRKGQGRNTLDAIEFLSFIREKCQLLDMDESFLYRSINEGFSGGEKKRNEILQMA
ALEPRLAILDETDSGLDIDALRIISQGVNAMRSPGRSIILVTHYQRLLDYIEPDFIHVLANGRIITSGDKSLALELEKKG
YSWLEEVEQL

Sequences:

>Translated_250_residues
MLNIKELNVAVNGQSILKGINLEVKPGEVHAIMGPNGSGKSTLSKVLAGHPSYEITRGDISYLGQDLLPMSPEERARAGI
FMSFQYPVEIPGVTNINFLKASVNAVRKGQGRNTLDAIEFLSFIREKCQLLDMDESFLYRSINEGFSGGEKKRNEILQMA
ALEPRLAILDETDSGLDIDALRIISQGVNAMRSPGRSIILVTHYQRLLDYIEPDFIHVLANGRIITSGDKSLALELEKKG
YSWLEEVEQL
>Mature_250_residues
MLNIKELNVAVNGQSILKGINLEVKPGEVHAIMGPNGSGKSTLSKVLAGHPSYEITRGDISYLGQDLLPMSPEERARAGI
FMSFQYPVEIPGVTNINFLKASVNAVRKGQGRNTLDAIEFLSFIREKCQLLDMDESFLYRSINEGFSGGEKKRNEILQMA
ALEPRLAILDETDSGLDIDALRIISQGVNAMRSPGRSIILVTHYQRLLDYIEPDFIHVLANGRIITSGDKSLALELEKKG
YSWLEEVEQL

Specific function: Unknown

COG id: COG0396

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI156105685, Length=236, Percent_Identity=29.2372881355932, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI42741659, Length=222, Percent_Identity=27.4774774774775, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI62526033, Length=233, Percent_Identity=30.0429184549356, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI1787972, Length=246, Percent_Identity=61.3821138211382, Blast_Score=322, Evalue=1e-89,
Organism=Escherichia coli, GI1789891, Length=223, Percent_Identity=29.5964125560538, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1788225, Length=233, Percent_Identity=29.1845493562232, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786319, Length=195, Percent_Identity=30.7692307692308, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790525, Length=221, Percent_Identity=31.2217194570136, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790190, Length=229, Percent_Identity=27.9475982532751, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081791, Length=209, Percent_Identity=30.622009569378, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789864, Length=238, Percent_Identity=26.4705882352941, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787792, Length=227, Percent_Identity=29.0748898678414, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789672, Length=207, Percent_Identity=27.0531400966184, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787759, Length=254, Percent_Identity=26.3779527559055, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786698, Length=205, Percent_Identity=30.2439024390244, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790162, Length=209, Percent_Identity=28.2296650717703, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787712, Length=209, Percent_Identity=28.7081339712919, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790467, Length=221, Percent_Identity=30.7692307692308, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1786654, Length=234, Percent_Identity=28.6324786324786, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17541710, Length=234, Percent_Identity=29.4871794871795, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI25146777, Length=229, Percent_Identity=28.82096069869, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71996809, Length=228, Percent_Identity=26.7543859649123, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI193202349, Length=225, Percent_Identity=30.6666666666667, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193211015, Length=228, Percent_Identity=26.7543859649123, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193211017, Length=228, Percent_Identity=26.7543859649123, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17567265, Length=217, Percent_Identity=29.4930875576037, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI212646699, Length=216, Percent_Identity=29.6296296296296, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193209708, Length=220, Percent_Identity=30, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI161076682, Length=229, Percent_Identity=26.2008733624454, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI161076684, Length=229, Percent_Identity=26.2008733624454, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24581617, Length=229, Percent_Identity=26.2008733624454, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24581615, Length=229, Percent_Identity=26.2008733624454, Blast_Score=67, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR010230 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 27704; Mature: 27704

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNIKELNVAVNGQSILKGINLEVKPGEVHAIMGPNGSGKSTLSKVLAGHPSYEITRGDI
CCCEEEEEEEECCHHHHHCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCEEECCHH
SYLGQDLLPMSPEERARAGIFMSFQYPVEIPGVTNINFLKASVNAVRKGQGRNTLDAIEF
HHHCCCCCCCCCHHHHHCCEEEEEECCEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
LSFIREKCQLLDMDESFLYRSINEGFSGGEKKRNEILQMAALEPRLAILDETDSGLDIDA
HHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
LRIISQGVNAMRSPGRSIILVTHYQRLLDYIEPDFIHVLANGRIITSGDKSLALELEKKG
HHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCEEEEEECCEEEECCCCEEEEEEHHCC
YSWLEEVEQL
CHHHHHHHCC
>Mature Secondary Structure
MLNIKELNVAVNGQSILKGINLEVKPGEVHAIMGPNGSGKSTLSKVLAGHPSYEITRGDI
CCCEEEEEEEECCHHHHHCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCEEECCHH
SYLGQDLLPMSPEERARAGIFMSFQYPVEIPGVTNINFLKASVNAVRKGQGRNTLDAIEF
HHHCCCCCCCCCHHHHHCCEEEEEECCEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
LSFIREKCQLLDMDESFLYRSINEGFSGGEKKRNEILQMAALEPRLAILDETDSGLDIDA
HHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
LRIISQGVNAMRSPGRSIILVTHYQRLLDYIEPDFIHVLANGRIITSGDKSLALELEKKG
HHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCEEEEEECCEEEECCCCEEEEEEHHCC
YSWLEEVEQL
CHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]