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The map label for this gene is yqgF [C]

Identifier: 54293569

GI number: 54293569

Start: 674272

End: 674691

Strand: Direct

Name: yqgF [C]

Synonym: lpl0621

Alternate gene names: 54293569

Gene position: 674272-674691 (Clockwise)

Preceding gene: 54293568

Following gene: 54293570

Centisome position: 20.15

GC content: 42.14

Gene sequence:

>420_bases
ATGCCTAGAGGTGTATATTTAGGTTTTGATTTTGGGTATAAACGCATAGGAGTCGCTGTAGGACAGCGGCTAACTTGTAG
TGCCTCTCCCTTATCTACTATAGAAGCCAAAGCCGGAATCCCTGATTGGAATACCATTCAAAAAGTGATAACCCAATGGA
ATCCACAAGCTTTAATTGTAGGTCTTCCTACCTGTATTGATGACCGTGAATTGTATACAACATCAGCTGCTCGTCGTTTT
GCAAAGCAATTGCACAAGCAGTTTTCTTTACCTGTGCATTTAGTCGATGAACGACTTTCAACAGTAGAGGCAAGAGGGTA
TTTGTTTGAGCAGGGGGGATATCGCCAGATTAAAAAAGCCGAGGTAGATAGTATAGCAGCTTGTGTTATACTGGAGCAGT
GGTTGCAACAATCGGAATAA

Upstream 100 bases:

>100_bases
AAATCTGAAATTCTTTATGAAGTGCCCTTTGAAGAGCGTTGGGAATACGCGGGATTAACGCTGGGCATCAAAATGAATCA
ACTCTCTTCTGATGCTGGCC

Downstream 100 bases:

>100_bases
CTCAAAGAGTATTTTTCTTTTGGCGTAAAATGAAATTTGGCGGGGGAACATGAAGCATTTTATTGAAATTAGTCAATTGT
CATCTGAACAAATTGAATCC

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MPRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVGLPTCIDDRELYTTSAARRF
AKQLHKQFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKAEVDSIAACVILEQWLQQSE

Sequences:

>Translated_139_residues
MPRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVGLPTCIDDRELYTTSAARRF
AKQLHKQFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKAEVDSIAACVILEQWLQQSE
>Mature_138_residues
PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVGLPTCIDDRELYTTSAARRFA
KQLHKQFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKAEVDSIAACVILEQWLQQSE

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=135, Percent_Identity=53.3333333333333, Blast_Score=155, Evalue=1e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 15613; Mature: 15482

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIV
CCCCEEEECCCCHHHHHHHHCCEEEECCCCCHHHHHCCCCCCHHHHHHHHHCCCCCEEEE
GLPTCIDDRELYTTSAARRFAKQLHKQFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA
ECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEECCCCCHHHHHH
EVDSIAACVILEQWLQQSE
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIV
CCCEEEECCCCHHHHHHHHCCEEEECCCCCHHHHHCCCCCCHHHHHHHHHCCCCCEEEE
GLPTCIDDRELYTTSAARRFAKQLHKQFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA
ECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEECCCCCHHHHHH
EVDSIAACVILEQWLQQSE
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA