Click here to switch to the map view.

The map label for this gene is rnfH [H]

Identifier: 54293363

GI number: 54293363

Start: 459361

End: 459633

Strand: Direct

Name: rnfH [H]

Synonym: lpl0412

Alternate gene names: 54293363

Gene position: 459361-459633 (Clockwise)

Preceding gene: 54293362

Following gene: 54293365

Centisome position: 13.73

GC content: 36.26

Gene sequence:

>273_bases
ATGGTAAAGGTTGAATTAGTCTATATAGCGAATTCTAAAAATTGCCTGCATTACAAAATGGATTTAAAACAGGGGGCTAC
AGTTGAAGAGGCACTCATTAAATCAAATATTTATTCAATTTGTCCTGAAACGAGGGAATTACTCGTAGGAGTATACGGAA
AGCGAGTTTCTGTGGACCAGGTATTGAAAGAAGGAGATCGAATTGAGATTTATAGACCATTGATACTCGACCCCAAGGAA
AAACGCCGTAAATTAGCACAGTTTAAAAAATAG

Upstream 100 bases:

>100_bases
GAATTTGCCGGGAAAATATTTTCCATGCTTCTAGGTCCCATATTTGATCAGATAACCGATAAAATGGTTGACGCATTTTG
CGAAAGAGCCGAGGTCATTT

Downstream 100 bases:

>100_bases
AGGCAAATTAGGCATTTTAATCGGCACTGAACTCTTAAAAACAATTTTCCCCTTATCTAATCACTTAGGCAAGGGGGAGA
TAGTAAATTACGGCTTATGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 90; Mature: 90

Protein sequence:

>90_residues
MVKVELVYIANSKNCLHYKMDLKQGATVEEALIKSNIYSICPETRELLVGVYGKRVSVDQVLKEGDRIEIYRPLILDPKE
KRRKLAQFKK

Sequences:

>Translated_90_residues
MVKVELVYIANSKNCLHYKMDLKQGATVEEALIKSNIYSICPETRELLVGVYGKRVSVDQVLKEGDRIEIYRPLILDPKE
KRRKLAQFKK
>Mature_90_residues
MVKVELVYIANSKNCLHYKMDLKQGATVEEALIKSNIYSICPETRELLVGVYGKRVSVDQVLKEGDRIEIYRPLILDPKE
KRRKLAQFKK

Specific function: Unknown

COG id: COG2914

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0125 (rnfH) family [H]

Homologues:

Organism=Escherichia coli, GI87082139, Length=88, Percent_Identity=38.6363636363636, Blast_Score=59, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005346 [H]

Pfam domain/function: PF03658 UPF0125 [H]

EC number: NA

Molecular weight: Translated: 10453; Mature: 10453

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKVELVYIANSKNCLHYKMDLKQGATVEEALIKSNIYSICPETRELLVGVYGKRVSVDQ
CEEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHH
VLKEGDRIEIYRPLILDPKEKRRKLAQFKK
HHCCCCEEEEECCEEECCHHHHHHHHHCCC
>Mature Secondary Structure
MVKVELVYIANSKNCLHYKMDLKQGATVEEALIKSNIYSICPETRELLVGVYGKRVSVDQ
CEEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHH
VLKEGDRIEIYRPLILDPKEKRRKLAQFKK
HHCCCCEEEEECCEEECCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA