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The map label for this gene is oppB

Identifier: 54020378

GI number: 54020378

Start: 204954

End: 206054

Strand: Reverse

Name: oppB

Synonym: mhp169

Alternate gene names: 54020378

Gene position: 206054-204954 (Counterclockwise)

Preceding gene: 54020379

Following gene: 54020377

Centisome position: 23.08

GC content: 29.97

Gene sequence:

>1101_bases
ATGTCTTTAAAAAACGAAGAAGGCCAGCATCTTGGGCCAGGTTCTAATATCCTAAATTTTTCGGTTTCGAAAATAAATCC
AAAAAGTATCGATTATAATCTCATTTATTCAGTTGTAAAACATAAAAAAAGTCGGTTTTCTTGACTTAAATATATAAACT
TTGAATCTTTTGCATTTCGATTTTTTAAGAAAATTACTAAAATTTTTCTTGAATTTGTAATAGTAGCTTGAATAGTTGCA
ACTTTGGTTTTCTTGTTAATTGATTCTATTCCCGGAGATCCAAGTTTTCTTGATGGACTAACAGAGGCCCAAAAAACAGC
AGAAAAACAACTTTATGGACTAGATTTACCACAAGCACAACGTTATTTTAATTATTTATGAAAGTTTATCCATTTTGATT
TTGGAATTTCTTATAGTTTAAGGCCGCGTGTTGAAATTAGTGATTTTATTTGGCAAAGATTTTTTACCTCATTTTCAATT
GGTATTGTCTCAGTTGTTCTTACAATTCTAATCGGTGTTCCCCTCGGAATTGCTGTTGGTAAAAATCCAGGTAAATTTTT
GGATAATTTTGCAACAATTTGGATTGCGGTTTTTTCATCAATTCCGTCACTAGTTTTTGCTTTACTTTTATTAATTTTTG
GCCAAAAGACTGGAATTCCTTATATTTTTAATATTCAGGATTTTTCTACTTTTGTCCTTCCAGCGATTGCACTTTCAATT
GGATCGGTAATTAGTTATGTCCGTTATATTCGGTTTGAGCTAAATAATGAGCTAAATTCGATGCATGCAAAGTTTGCTTA
TCTAAAAAATTTAACAAGAAATCGTTTTGTTTGAACTCATGCTCTTAAAGCTTCGCTTTTTCCAATTGCAACTTTTTTCC
CAATTGTTGTTCTTGGCTCATTTATTGGATCAATTTTTGTTGAAAAGATTTTTTTAATTACCGGTTCAGGAGGTATTATG
ATCGATGCAATTCAGTCAAAAGATAATAATATCATTCTTTTTTTGGTAATAGTTTATTCACTTTTGACAATAATTTCCTA
TACTTTAAGAGATATAAGTTATGAATTACTTGATCCGCGAATTAGAAGGAGAGCAAAATAA

Upstream 100 bases:

>100_bases
GAATCTAATAATTATATAATTTAAAAAAAATATTAGATGAGAAACGGGTTAAAAAACCCGTTTTTTTATTTTAAATATAA
ATAACGAAGAAAGGAACAAA

Downstream 100 bases:

>100_bases
TGACCCATTTTCCTTCAATTGAGAAATATATTGACCAAAACTTAAAACCAAACCCATTTTTACAACCTTTTTCTTATAAA
ATGTGGAAATTGATGGTTGC

Product: oligopeptide ABC transporter system permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 365

Protein sequence:

>366_residues
MSLKNEEGQHLGPGSNILNFSVSKINPKSIDYNLIYSVVKHKKSRFSWLKYINFESFAFRFFKKITKIFLEFVIVAWIVA
TLVFLLIDSIPGDPSFLDGLTEAQKTAEKQLYGLDLPQAQRYFNYLWKFIHFDFGISYSLRPRVEISDFIWQRFFTSFSI
GIVSVVLTILIGVPLGIAVGKNPGKFLDNFATIWIAVFSSIPSLVFALLLLIFGQKTGIPYIFNIQDFSTFVLPAIALSI
GSVISYVRYIRFELNNELNSMHAKFAYLKNLTRNRFVWTHALKASLFPIATFFPIVVLGSFIGSIFVEKIFLITGSGGIM
IDAIQSKDNNIILFLVIVYSLLTIISYTLRDISYELLDPRIRRRAK

Sequences:

>Translated_366_residues
MSLKNEEGQHLGPGSNILNFSVSKINPKSIDYNLIYSVVKHKKSRFS*LKYINFESFAFRFFKKITKIFLEFVIVA*IVA
TLVFLLIDSIPGDPSFLDGLTEAQKTAEKQLYGLDLPQAQRYFNYL*KFIHFDFGISYSLRPRVEISDFIWQRFFTSFSI
GIVSVVLTILIGVPLGIAVGKNPGKFLDNFATIWIAVFSSIPSLVFALLLLIFGQKTGIPYIFNIQDFSTFVLPAIALSI
GSVISYVRYIRFELNNELNSMHAKFAYLKNLTRNRFV*THALKASLFPIATFFPIVVLGSFIGSIFVEKIFLITGSGGIM
IDAIQSKDNNIILFLVIVYSLLTIISYTLRDISYELLDPRIRRRAK
>Mature_365_residues
SLKNEEGQHLGPGSNILNFSVSKINPKSIDYNLIYSVVKHKKSRFS*LKYINFESFAFRFFKKITKIFLEFVIVA*IVAT
LVFLLIDSIPGDPSFLDGLTEAQKTAEKQLYGLDLPQAQRYFNYL*KFIHFDFGISYSLRPRVEISDFIWQRFFTSFSIG
IVSVVLTILIGVPLGIAVGKNPGKFLDNFATIWIAVFSSIPSLVFALLLLIFGQKTGIPYIFNIQDFSTFVLPAIALSIG
SVISYVRYIRFELNNELNSMHAKFAYLKNLTRNRFV*THALKASLFPIATFFPIVVLGSFIGSIFVEKIFLITGSGGIMI
DAIQSKDNNIILFLVIVYSLLTIISYTLRDISYELLDPRIRRRAK

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane. Is expressed to facilitate adaptation to nutrient deficiency conditions [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=322, Percent_Identity=23.9130434782609, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787053, Length=296, Percent_Identity=27.3648648648649, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787497, Length=297, Percent_Identity=29.2929292929293, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788504, Length=269, Percent_Identity=25.6505576208178, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1789888, Length=314, Percent_Identity=26.1146496815287, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 40992; Mature: 40861

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKNEEGQHLGPGSNILNFSVSKINPKSIDYNLIYSVVKHKKSRFSLKYINFESFAFRF
CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCEEEEECHHHHHHHH
FKKITKIFLEFVIVAIVATLVFLLIDSIPGDPSFLDGLTEAQKTAEKQLYGLDLPQAQRY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
FNYLKFIHFDFGISYSLRPRVEISDFIWQRFFTSFSIGIVSVVLTILIGVPLGIAVGKNP
HHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCC
GKFLDNFATIWIAVFSSIPSLVFALLLLIFGQKTGIPYIFNIQDFSTFVLPAIALSIGSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHH
ISYVRYIRFELNNELNSMHAKFAYLKNLTRNRFVTHALKASLFPIATFFPIVVLGSFIGS
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFVEKIFLITGSGGIMIDAIQSKDNNIILFLVIVYSLLTIISYTLRDISYELLDPRIRRR
HHHHHHHEEECCCCEEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHC
AK
CC
>Mature Secondary Structure 
SLKNEEGQHLGPGSNILNFSVSKINPKSIDYNLIYSVVKHKKSRFSLKYINFESFAFRF
CCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCEEEEECHHHHHHHH
FKKITKIFLEFVIVAIVATLVFLLIDSIPGDPSFLDGLTEAQKTAEKQLYGLDLPQAQRY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
FNYLKFIHFDFGISYSLRPRVEISDFIWQRFFTSFSIGIVSVVLTILIGVPLGIAVGKNP
HHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCC
GKFLDNFATIWIAVFSSIPSLVFALLLLIFGQKTGIPYIFNIQDFSTFVLPAIALSIGSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHH
ISYVRYIRFELNNELNSMHAKFAYLKNLTRNRFVTHALKASLFPIATFFPIVVLGSFIGS
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFVEKIFLITGSGGIMIDAIQSKDNNIILFLVIVYSLLTIISYTLRDISYELLDPRIRRR
HHHHHHHEEECCCCEEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHC
AK
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]