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The map label for this gene is xylR [H]

Identifier: 52787962

GI number: 52787962

Start: 4130780

End: 4131952

Strand: Reverse

Name: xylR [H]

Synonym: BLi04285

Alternate gene names: 52787962

Gene position: 4131952-4130780 (Counterclockwise)

Preceding gene: 52787970

Following gene: 52787958

Centisome position: 97.85

GC content: 51.15

Gene sequence:

>1173_bases
ATGCAGCGCGGTACATTTCAATTAATGAAATCGGTGAACAAATCGATCATTCTTAATAAAATCAGAACATCAGAGCCGAT
TTCGAGAGCTGAGATCGCCAAGGAAACAAAGATCACCCCTCCCACGGTCTCAAGCATCGTCAAAGAGCTCATCGGACAAG
GACTCGTTAAAGAAAGCACGCTCGGTCGTTCGAGCGGCGGAAGAAAGCCGACCATGCTCCACATCAACACGGGTGCCTAT
TATGTCATTGGCATTGATGCCGGGCCTGAGACGGTGGAGTGCGTCTTAACCGATTTAGCCGGAGGGATTTTGCAGCGGAC
GTCCAGCCTGCTGAAAAAACCGCTGACAAACGAGAGGTTCATGGAAGTTTTAAAAGAAAGTGTCTATGCCATTTTGGGAC
GTGCCGATGTCGAGCAAGAAAAGATCATCGGGATCGGCATTGCAATGCACGGTGTGGTCGATGCTGAAACGGGAATGTCG
CGCATCGCACCGATTTTAAACTTAACCAATATCCCCATCAAAGATGTGCTGGAACAAGAATTCAACTTAACCGTAAGAGT
TGAAAACGATGCCCGGGCGATGGCGCTTGGCGAATCGTGGTTCGGCGGCCGCGATGACGCAGGGAGCATGGCTGCCGTGA
ATATCGGCCGCGGCGTCGGTGCGGGGATCGTCATCAACGGAAAACTGTACCATGGAGCTGAAGGGATCGCGGGTGAACTG
GGCCATATGATCATTGATATCAATGGAGAAAAGTGCGAGTGCGGCAACCGCGGCTGCCTGCAGACGATTGTGAGCGGAAA
AGCAATTGCCGAACGGGGGAAAAAGCGGTTGAAAGAAAGCACTGACAGCCTGACAGCCAAAGATTTGTTTGAAATGGCCG
AGAACGGCTGCCAAACATGTATCGAACTTTTTCAGGAAACCGGTGTGATCATCGGAATCGGGCTGACCAATTTCATTCAT
CTTGTCAATCCGGGCAAAATCGTGCTGGGAGGAGGAGTGATGAAGGGCGGGAGGTTCATATTGCCGGCGATACGAGAAAC
GATACAGCAGAAAGCTTTAACAGCCGAAGCGAGGCAGACAGAAGTGACGATAACGAAGCTCGGCGATGAAGCGACGCTTT
ACGGAGCCGTTTCATTGCTGCTGGCGGAGCTGTTTGATCCGGTGCTAAAATAA

Upstream 100 bases:

>100_bases
CAAAGCCTTCGGAAACACCTATCTTGTTTTCGTTTGTTAATTTAATTAATTAACCATGGTACAATAAAACCTACGATATG
GTGTAAATGGAGGATTTCAC

Downstream 100 bases:

>100_bases
GCTTATTTTTTCGCCTATTTTAACACCGGTGAAGCCTTACCCCTGATGATTGACTGTGCGGATAAAGCGCATGAAAGCTT
CGCGGTCTTTGAATACTCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MQRGTFQLMKSVNKSIILNKIRTSEPISRAEIAKETKITPPTVSSIVKELIGQGLVKESTLGRSSGGRKPTMLHINTGAY
YVIGIDAGPETVECVLTDLAGGILQRTSSLLKKPLTNERFMEVLKESVYAILGRADVEQEKIIGIGIAMHGVVDAETGMS
RIAPILNLTNIPIKDVLEQEFNLTVRVENDARAMALGESWFGGRDDAGSMAAVNIGRGVGAGIVINGKLYHGAEGIAGEL
GHMIIDINGEKCECGNRGCLQTIVSGKAIAERGKKRLKESTDSLTAKDLFEMAENGCQTCIELFQETGVIIGIGLTNFIH
LVNPGKIVLGGGVMKGGRFILPAIRETIQQKALTAEARQTEVTITKLGDEATLYGAVSLLLAELFDPVLK

Sequences:

>Translated_390_residues
MQRGTFQLMKSVNKSIILNKIRTSEPISRAEIAKETKITPPTVSSIVKELIGQGLVKESTLGRSSGGRKPTMLHINTGAY
YVIGIDAGPETVECVLTDLAGGILQRTSSLLKKPLTNERFMEVLKESVYAILGRADVEQEKIIGIGIAMHGVVDAETGMS
RIAPILNLTNIPIKDVLEQEFNLTVRVENDARAMALGESWFGGRDDAGSMAAVNIGRGVGAGIVINGKLYHGAEGIAGEL
GHMIIDINGEKCECGNRGCLQTIVSGKAIAERGKKRLKESTDSLTAKDLFEMAENGCQTCIELFQETGVIIGIGLTNFIH
LVNPGKIVLGGGVMKGGRFILPAIRETIQQKALTAEARQTEVTITKLGDEATLYGAVSLLLAELFDPVLK
>Mature_390_residues
MQRGTFQLMKSVNKSIILNKIRTSEPISRAEIAKETKITPPTVSSIVKELIGQGLVKESTLGRSSGGRKPTMLHINTGAY
YVIGIDAGPETVECVLTDLAGGILQRTSSLLKKPLTNERFMEVLKESVYAILGRADVEQEKIIGIGIAMHGVVDAETGMS
RIAPILNLTNIPIKDVLEQEFNLTVRVENDARAMALGESWFGGRDDAGSMAAVNIGRGVGAGIVINGKLYHGAEGIAGEL
GHMIIDINGEKCECGNRGCLQTIVSGKAIAERGKKRLKESTDSLTAKDLFEMAENGCQTCIELFQETGVIIGIGLTNFIH
LVNPGKIVLGGGVMKGGRFILPAIRETIQQKALTAEARQTEVTITKLGDEATLYGAVSLLLAELFDPVLK

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Homo sapiens, GI298566325, Length=284, Percent_Identity=24.2957746478873, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI298566315, Length=284, Percent_Identity=24.2957746478873, Blast_Score=90, Evalue=5e-18,
Organism=Homo sapiens, GI190014632, Length=284, Percent_Identity=24.2957746478873, Blast_Score=90, Evalue=5e-18,
Organism=Homo sapiens, GI4885285, Length=284, Percent_Identity=24.2957746478873, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI298566312, Length=137, Percent_Identity=27.007299270073, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI1786891, Length=398, Percent_Identity=31.6582914572864, Blast_Score=193, Evalue=2e-50,
Organism=Escherichia coli, GI1787878, Length=385, Percent_Identity=27.012987012987, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI87082127, Length=363, Percent_Identity=25.6198347107438, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI87081733, Length=310, Percent_Identity=26.7741935483871, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1787363, Length=285, Percent_Identity=23.5087719298246, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1790522, Length=195, Percent_Identity=30.7692307692308, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 41755; Mature: 41755

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: PS01125 ROK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRGTFQLMKSVNKSIILNKIRTSEPISRAEIAKETKITPPTVSSIVKELIGQGLVKEST
CCCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHC
LGRSSGGRKPTMLHINTGAYYVIGIDAGPETVECVLTDLAGGILQRTSSLLKKPLTNERF
CCCCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
MEVLKESVYAILGRADVEQEKIIGIGIAMHGVVDAETGMSRIAPILNLTNIPIKDVLEQE
HHHHHHHHHHHHCCCCCCCCCEEEEEEHHHCCEECCCCHHHHHHHHCCCCCCHHHHHHHH
FNLTVRVENDARAMALGESWFGGRDDAGSMAAVNIGRGVGAGIVINGKLYHGAEGIAGEL
CCEEEEECCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCEEEECEEEECCCCHHHCC
GHMIIDINGEKCECGNRGCLQTIVSGKAIAERGKKRLKESTDSLTAKDLFEMAENGCQTC
CEEEEEECCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IELFQETGVIIGIGLTNFIHLVNPGKIVLGGGVMKGGRFILPAIRETIQQKALTAEARQT
HHHHHHCCEEEEECHHHEEEEECCCEEEEECCEECCCCEEHHHHHHHHHHHHHHHHHHHC
EVTITKLGDEATLYGAVSLLLAELFDPVLK
EEEEEECCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQRGTFQLMKSVNKSIILNKIRTSEPISRAEIAKETKITPPTVSSIVKELIGQGLVKEST
CCCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHC
LGRSSGGRKPTMLHINTGAYYVIGIDAGPETVECVLTDLAGGILQRTSSLLKKPLTNERF
CCCCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
MEVLKESVYAILGRADVEQEKIIGIGIAMHGVVDAETGMSRIAPILNLTNIPIKDVLEQE
HHHHHHHHHHHHCCCCCCCCCEEEEEEHHHCCEECCCCHHHHHHHHCCCCCCHHHHHHHH
FNLTVRVENDARAMALGESWFGGRDDAGSMAAVNIGRGVGAGIVINGKLYHGAEGIAGEL
CCEEEEECCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCEEEECEEEECCCCHHHCC
GHMIIDINGEKCECGNRGCLQTIVSGKAIAERGKKRLKESTDSLTAKDLFEMAENGCQTC
CEEEEEECCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IELFQETGVIIGIGLTNFIHLVNPGKIVLGGGVMKGGRFILPAIRETIQQKALTAEARQT
HHHHHHCCEEEEECHHHEEEEECCCEEEEECCEECCCCEEHHHHHHHHHHHHHHHHHHHC
EVTITKLGDEATLYGAVSLLLAELFDPVLK
EEEEEECCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]