Click here to switch to the map view.

The map label for this gene is yxdJ [H]

Identifier: 52787948

GI number: 52787948

Start: 4112602

End: 4113309

Strand: Reverse

Name: yxdJ [H]

Synonym: BLi04271

Alternate gene names: 52787948

Gene position: 4113309-4112602 (Counterclockwise)

Preceding gene: 52787950

Following gene: 52787947

Centisome position: 97.41

GC content: 48.87

Gene sequence:

>708_bases
ATGCAAAAAGTGATGATTGTAGAAGACGACCCGAAAATTGCAGATTTGTTAAAATCGCATATTGTCAAATACGGATACAA
CGTTCATGTAGTGAAAGACTTTGACCGTGTCATGGATGAGTTCAGAAGCACGGCGCCTGATCTTGTTCTGCTTGATATTA
ACCTGCCGAGCTTTGACGGCTACTACTGGTGCCGGCAAATCCGCCAGGAATCGATTTGCCCCGTCTTGTTTATTTCTGCG
CGGACAGGTGAAATGGATCAGGTGATGGCATTGGAAAACGGCGGAGATGACTTTATCACCAAGCCGTTTCACGCCGAGAT
CGTCATGGCAAAAATACGCAGCCAGCTTCGCAGGGCTTACGGCGAATACGCGGCGAAGGCGGAGGAACGGCTGCTGGAAA
AAGAAGGGCTGCGGCTGTATCCGGAAAGACTTGAACTGACATTTGCCGGTCAAACGGCTGCTTTGACGAAAAAAGAAGCG
GATATTATTGAAAGCTTAATGGAACGCCATCCGAGAATTTCAGGCCGCGAAGATTTGCTGGCCAAGCTGTGGGATGATCA
GGCATATGTGGATGAAAACACGCTTAATGTCAACATTACGCGCGTCAGAAAAAAATTTCAGGAGCTCGGTATTGAAGATG
CAGTGGAAACAGTGCGGGGCGCGGGCTATCGCTTGAATGTATCCTGGGTGAAGGCGGGAGAGGAATGA

Upstream 100 bases:

>100_bases
AATACACTTACATGATTGTAAGGTAGGATGGATCGCGGCAGTTTTTGTTTATCAGACCGCTTCGTGTCATAATATATCCA
AACCAAAAGGAGAGACCGAG

Downstream 100 bases:

>100_bases
AGCTTTTTTTCAAAGAGCACTATTTGTTGATTGCCGTGCAGGCGCTGCAGTTTATCACAATGCTGTCAGTGTACTGGCTT
GATGGGTATCAGCACATCAG

Product: YxdJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MQKVMIVEDDPKIADLLKSHIVKYGYNVHVVKDFDRVMDEFRSTAPDLVLLDINLPSFDGYYWCRQIRQESICPVLFISA
RTGEMDQVMALENGGDDFITKPFHAEIVMAKIRSQLRRAYGEYAAKAEERLLEKEGLRLYPERLELTFAGQTAALTKKEA
DIIESLMERHPRISGREDLLAKLWDDQAYVDENTLNVNITRVRKKFQELGIEDAVETVRGAGYRLNVSWVKAGEE

Sequences:

>Translated_235_residues
MQKVMIVEDDPKIADLLKSHIVKYGYNVHVVKDFDRVMDEFRSTAPDLVLLDINLPSFDGYYWCRQIRQESICPVLFISA
RTGEMDQVMALENGGDDFITKPFHAEIVMAKIRSQLRRAYGEYAAKAEERLLEKEGLRLYPERLELTFAGQTAALTKKEA
DIIESLMERHPRISGREDLLAKLWDDQAYVDENTLNVNITRVRKKFQELGIEDAVETVRGAGYRLNVSWVKAGEE
>Mature_235_residues
MQKVMIVEDDPKIADLLKSHIVKYGYNVHVVKDFDRVMDEFRSTAPDLVLLDINLPSFDGYYWCRQIRQESICPVLFISA
RTGEMDQVMALENGGDDFITKPFHAEIVMAKIRSQLRRAYGEYAAKAEERLLEKEGLRLYPERLELTFAGQTAALTKKEA
DIIESLMERHPRISGREDLLAKLWDDQAYVDENTLNVNITRVRKKFQELGIEDAVETVRGAGYRLNVSWVKAGEE

Specific function: Probable member of the two-component regulatory system yxdK/yxdJ. Positively regulates the expression of the yxdLMyxeA operon by direct interaction with its promoter region. Could also indirectly regulate the expression of the dlt operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788394, Length=226, Percent_Identity=33.1858407079646, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1786599, Length=231, Percent_Identity=30.7359307359307, Blast_Score=130, Evalue=7e-32,
Organism=Escherichia coli, GI1790860, Length=226, Percent_Identity=30.5309734513274, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1787375, Length=227, Percent_Identity=30.3964757709251, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789809, Length=226, Percent_Identity=29.646017699115, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI87082012, Length=226, Percent_Identity=27.8761061946903, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI2367329, Length=229, Percent_Identity=31.0043668122271, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1790863, Length=227, Percent_Identity=28.6343612334802, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1789402, Length=227, Percent_Identity=29.9559471365639, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1786911, Length=226, Percent_Identity=28.7610619469027, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1786784, Length=226, Percent_Identity=28.3185840707965, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787229, Length=227, Percent_Identity=28.1938325991189, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1790552, Length=226, Percent_Identity=32.3008849557522, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI145693140, Length=232, Percent_Identity=26.2931034482759, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 27045; Mature: 27045

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKVMIVEDDPKIADLLKSHIVKYGYNVHVVKDFDRVMDEFRSTAPDLVLLDINLPSFDG
CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCEEEEEECCCCCCH
YYWCRQIRQESICPVLFISARTGEMDQVMALENGGDDFITKPFHAEIVMAKIRSQLRRAY
HHHHHHHHHCCCCCEEEEECCCCCHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
GEYAAKAEERLLEKEGLRLYPERLELTFAGQTAALTKKEADIIESLMERHPRISGREDLL
HHHHHHHHHHHHHHCCCEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
AKLWDDQAYVDENTLNVNITRVRKKFQELGIEDAVETVRGAGYRLNVSWVKAGEE
HHHHCCCCEECCCCEEEEHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEEEECCCC
>Mature Secondary Structure
MQKVMIVEDDPKIADLLKSHIVKYGYNVHVVKDFDRVMDEFRSTAPDLVLLDINLPSFDG
CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCEEEEEECCCCCCH
YYWCRQIRQESICPVLFISARTGEMDQVMALENGGDDFITKPFHAEIVMAKIRSQLRRAY
HHHHHHHHHCCCCCEEEEECCCCCHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
GEYAAKAEERLLEKEGLRLYPERLELTFAGQTAALTKKEADIIESLMERHPRISGREDLL
HHHHHHHHHHHHHHCCCEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
AKLWDDQAYVDENTLNVNITRVRKKFQELGIEDAVETVRGAGYRLNVSWVKAGEE
HHHHCCCCEECCCCEEEEHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7952181; 9384377 [H]