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The map label for this gene is ykgB [H]

Identifier: 52787819

GI number: 52787819

Start: 3969513

End: 3970559

Strand: Reverse

Name: ykgB [H]

Synonym: BLi04142

Alternate gene names: 52787819

Gene position: 3970559-3969513 (Counterclockwise)

Preceding gene: 52787828

Following gene: 52787817

Centisome position: 94.03

GC content: 49.0

Gene sequence:

>1047_bases
ATGGCGAAATACAGAGGTTATATCGGAACATATACAAAAGCAGACAGCGTAGGGATTTATACATTTGAGCTTGATACGGA
AAAAAAGGCGTTAAGCACGCCGAAGCCGGCAGCAAAGCTGGGCAGTCCGACATATTTGAATATCGCCAAAGACAATGACA
TGCTTTATGCAGTGGTCAAAGACGGCGATAAGGGCGGGGTTGCCGCATATCGTATTGACGGTTCCACAGGAGAGCTGACT
ATCGTCAACCAGCAGACCGGGGAAGGACCGTCGCCTTGCCACGTCAGTGTGGATCAAGATAACCGTTATGTTCTGTCCGC
CAATTACCACAACGGGACGATCTTGGCATATCCTTTAAATGAAAGCCGCGGCCTGCTTGAGCCTTCATCAAAAGTACAGC
ATGAGGGATCAGGACCGCATGAGAGGCAGGAAAAAGCGCATACTCATTATTCAGGATTCTCACCTGATGAGAAATATGCA
GTGGCCGTCGATCTCGGAACGGATCATATCATCACGTATCAATTGAAAGAGGGCCGGCTTGAAGAAGTGAAAAAACACGC
TGCTGCACCGGGCTCAGGGCCGAGACATATCGAGTTCCATCCACAGGAAAAGTATGCGTATGTATTAACAGAGCTGAGTA
ATGAAGTCATCGTGCTGGAATACAACCCCGATTTGGGTGAATTCAGAGAGATTCAAGTGATTTCGGCATTGCCGGAAGGC
TTTGACGGCCATAGCCAAGGCGGCGCCATCCACATCACGAAAGACGGCAAATTTGTATACGCTTCAAACCGCGGCCACGA
CAGCATCGCCGTCTTCAGCGTCAACGAGTATTCGGGCGAACTTTCCCTGGTTGAACACGTATCAACTGAAGGGGAATGGC
CGCGCGACTTTGAGATTGATCCTTCAGAGCAATTCTTAGTTGCTTCCAACCAGGAAACAGGGACTTTGACATTGTTTGAA
AGAGACCGGACAACGGGCCGGCTGACGCTTTTAGAGTCTGGAGTTCCTGCTCCTGAAGCGGTTTGTGTGAAATTTTTACA
TCAATAA

Upstream 100 bases:

>100_bases
TTCATGTGAGCGCTTAAGGTTTTTGCATACCAGATCATGATAATTCAGTTTCTCTGAGTTAAAATAGGAATGGACGACTG
TCAAAAAAGGAGAGGATCAA

Downstream 100 bases:

>100_bases
AAGCAAAAAAAACTTGATTGGCCTTTTTAGCCAGTCAAGTTTTTTCTTTTTATAGCATGCGGCGGTTAACCGCTGTCATT
TTACTCCGCATCCAGCCCTT

Product: YkgB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MAKYRGYIGTYTKADSVGIYTFELDTEKKALSTPKPAAKLGSPTYLNIAKDNDMLYAVVKDGDKGGVAAYRIDGSTGELT
IVNQQTGEGPSPCHVSVDQDNRYVLSANYHNGTILAYPLNESRGLLEPSSKVQHEGSGPHERQEKAHTHYSGFSPDEKYA
VAVDLGTDHIITYQLKEGRLEEVKKHAAAPGSGPRHIEFHPQEKYAYVLTELSNEVIVLEYNPDLGEFREIQVISALPEG
FDGHSQGGAIHITKDGKFVYASNRGHDSIAVFSVNEYSGELSLVEHVSTEGEWPRDFEIDPSEQFLVASNQETGTLTLFE
RDRTTGRLTLLESGVPAPEAVCVKFLHQ

Sequences:

>Translated_348_residues
MAKYRGYIGTYTKADSVGIYTFELDTEKKALSTPKPAAKLGSPTYLNIAKDNDMLYAVVKDGDKGGVAAYRIDGSTGELT
IVNQQTGEGPSPCHVSVDQDNRYVLSANYHNGTILAYPLNESRGLLEPSSKVQHEGSGPHERQEKAHTHYSGFSPDEKYA
VAVDLGTDHIITYQLKEGRLEEVKKHAAAPGSGPRHIEFHPQEKYAYVLTELSNEVIVLEYNPDLGEFREIQVISALPEG
FDGHSQGGAIHITKDGKFVYASNRGHDSIAVFSVNEYSGELSLVEHVSTEGEWPRDFEIDPSEQFLVASNQETGTLTLFE
RDRTTGRLTLLESGVPAPEAVCVKFLHQ
>Mature_347_residues
AKYRGYIGTYTKADSVGIYTFELDTEKKALSTPKPAAKLGSPTYLNIAKDNDMLYAVVKDGDKGGVAAYRIDGSTGELTI
VNQQTGEGPSPCHVSVDQDNRYVLSANYHNGTILAYPLNESRGLLEPSSKVQHEGSGPHERQEKAHTHYSGFSPDEKYAV
AVDLGTDHIITYQLKEGRLEEVKKHAAAPGSGPRHIEFHPQEKYAYVLTELSNEVIVLEYNPDLGEFREIQVISALPEGF
DGHSQGGAIHITKDGKFVYASNRGHDSIAVFSVNEYSGELSLVEHVSTEGEWPRDFEIDPSEQFLVASNQETGTLTLFER
DRTTGRLTLLESGVPAPEAVCVKFLHQ

Specific function: Unknown

COG id: COG2706

COG function: function code G; 3-carboxymuconate cyclase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cycloisomerase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1786983, Length=305, Percent_Identity=29.8360655737705, Blast_Score=115, Evalue=5e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011048
- InterPro:   IPR019405
- InterPro:   IPR015943 [H]

Pfam domain/function: PF10282 DUF2394 [H]

EC number: NA

Molecular weight: Translated: 38274; Mature: 38143

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKYRGYIGTYTKADSVGIYTFELDTEKKALSTPKPAAKLGSPTYLNIAKDNDMLYAVVK
CCCCCCCEEECCCCCCEEEEEEEECCCHHHCCCCCCHHHCCCCEEEEEECCCCEEEEEEE
DGDKGGVAAYRIDGSTGELTIVNQQTGEGPSPCHVSVDQDNRYVLSANYHNGTILAYPLN
CCCCCCEEEEEEECCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEECC
ESRGLLEPSSKVQHEGSGPHERQEKAHTHYSGFSPDEKYAVAVDLGTDHIITYQLKEGRL
CCCCCCCCCHHHCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCH
EEVKKHAAAPGSGPRHIEFHPQEKYAYVLTELSNEVIVLEYNPDLGEFREIQVISALPEG
HHHHHHHCCCCCCCCEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCEEEEEEECCCCC
FDGHSQGGAIHITKDGKFVYASNRGHDSIAVFSVNEYSGELSLVEHVSTEGEWPRDFEID
CCCCCCCCEEEEEECCCEEEECCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCC
PSEQFLVASNQETGTLTLFERDRTTGRLTLLESGVPAPEAVCVKFLHQ
CCCCEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHCC
>Mature Secondary Structure 
AKYRGYIGTYTKADSVGIYTFELDTEKKALSTPKPAAKLGSPTYLNIAKDNDMLYAVVK
CCCCCCEEECCCCCCEEEEEEEECCCHHHCCCCCCHHHCCCCEEEEEECCCCEEEEEEE
DGDKGGVAAYRIDGSTGELTIVNQQTGEGPSPCHVSVDQDNRYVLSANYHNGTILAYPLN
CCCCCCEEEEEEECCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEECC
ESRGLLEPSSKVQHEGSGPHERQEKAHTHYSGFSPDEKYAVAVDLGTDHIITYQLKEGRL
CCCCCCCCCHHHCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCH
EEVKKHAAAPGSGPRHIEFHPQEKYAYVLTELSNEVIVLEYNPDLGEFREIQVISALPEG
HHHHHHHCCCCCCCCEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCEEEEEEECCCCC
FDGHSQGGAIHITKDGKFVYASNRGHDSIAVFSVNEYSGELSLVEHVSTEGEWPRDFEID
CCCCCCCCEEEEEECCCEEEECCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCC
PSEQFLVASNQETGTLTLFERDRTTGRLTLLESGVPAPEAVCVKFLHQ
CCCCEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]