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The map label for this gene is yxkH [H]

Identifier: 52787828

GI number: 52787828

Start: 3976578

End: 3977402

Strand: Reverse

Name: yxkH [H]

Synonym: BLi04151

Alternate gene names: 52787828

Gene position: 3977402-3976578 (Counterclockwise)

Preceding gene: 52787829

Following gene: 52787819

Centisome position: 94.19

GC content: 48.97

Gene sequence:

>825_bases
ATGTTACTTGTGCTGTCTATGTTGATGGGGGTGCTGTACGGGTGTTCCGGTCATGAAACAAAAGGAGAGGAAAAAACAGA
ACCAAATACGGCTCAAAAAGCGGCAAAACAATCAAAACAGCAGGCGGAACATGATCCATCATCCAAGTGGGTCAAAGTGA
AAAGCCCGGCCCGCATTCCGATTCTCATGTATCACAGCATTTCCTCAGGAAACAGCCTGCGCGTACCGGAAGGGGAATTC
CGCGGGCATATGAAGTGGCTGAAGGATAACGGCTATTACACGTTGACACCTGAGGAAGCCTATATTGTCTTAACGCAAGA
TAAAATGCCGAGTGATAAATGCGTGCTGATTACGTTTGATGACGGTTATACAGATAACTTTGAAAAAGCGTACCCGATTT
TGAAAGGCTATGGGATGAAGGCGACAATTTTTATGATCGGCAAATCGGTTGGCGGGAAGAACCATTTGACGGAGAAACAA
ATGAATGAAATGAGGCGAAACGGCATTTCGATTCAAAGCCATACCATTCATCACGTTGAATTGAACGGACTGGCACCGGG
ACAGCAGCTCGATGAAATGACGCGTTCCAAAGCGCTGTTTGATCGCATGTTCAGCCAAAATACGGTGATGCTGAGCTATC
CGGTCGGGCGCTACAACGAAGATACGCTGAAACTCGCAAAGCAGGCAGGCTATCAAATGGCCGTCACAACAGAACCGGGA
GCGGCATCTAGGGATCAGGGGATGTATGCGCTCCACCGCGTCCGAATCTCGCCGGGGATGTCGCCGGACGCCTTTGGGAA
AATGGTGGAACACAGCAGACAATAG

Upstream 100 bases:

>100_bases
CTCCTCCTCAAAGCAGGAACAGTGAAAAATGCCCGTTCCGCACCGATATTAAAAAGGATTCAGTAGATAGAAAGCGGGAA
TAATTGTGAAAAAAACGAAA

Downstream 100 bases:

>100_bases
GAAAGACGGCATTTATCATGATGCCGCTTTCCTTATTTTTTTTCGTTTTGGTGCGTCGGGCTCATGACAAGCCGCAGATT
CGGGCGCATACCTTCGGAGG

Product: YxkH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MLLVLSMLMGVLYGCSGHETKGEEKTEPNTAQKAAKQSKQQAEHDPSSKWVKVKSPARIPILMYHSISSGNSLRVPEGEF
RGHMKWLKDNGYYTLTPEEAYIVLTQDKMPSDKCVLITFDDGYTDNFEKAYPILKGYGMKATIFMIGKSVGGKNHLTEKQ
MNEMRRNGISIQSHTIHHVELNGLAPGQQLDEMTRSKALFDRMFSQNTVMLSYPVGRYNEDTLKLAKQAGYQMAVTTEPG
AASRDQGMYALHRVRISPGMSPDAFGKMVEHSRQ

Sequences:

>Translated_274_residues
MLLVLSMLMGVLYGCSGHETKGEEKTEPNTAQKAAKQSKQQAEHDPSSKWVKVKSPARIPILMYHSISSGNSLRVPEGEF
RGHMKWLKDNGYYTLTPEEAYIVLTQDKMPSDKCVLITFDDGYTDNFEKAYPILKGYGMKATIFMIGKSVGGKNHLTEKQ
MNEMRRNGISIQSHTIHHVELNGLAPGQQLDEMTRSKALFDRMFSQNTVMLSYPVGRYNEDTLKLAKQAGYQMAVTTEPG
AASRDQGMYALHRVRISPGMSPDAFGKMVEHSRQ
>Mature_274_residues
MLLVLSMLMGVLYGCSGHETKGEEKTEPNTAQKAAKQSKQQAEHDPSSKWVKVKSPARIPILMYHSISSGNSLRVPEGEF
RGHMKWLKDNGYYTLTPEEAYIVLTQDKMPSDKCVLITFDDGYTDNFEKAYPILKGYGMKATIFMIGKSVGGKNHLTEKQ
MNEMRRNGISIQSHTIHHVELNGLAPGQQLDEMTRSKALFDRMFSQNTVMLSYPVGRYNEDTLKLAKQAGYQMAVTTEPG
AASRDQGMYALHRVRISPGMSPDAFGKMVEHSRQ

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Escherichia coli, GI1786322, Length=249, Percent_Identity=30.5220883534137, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 30744; Mature: 30744

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLVLSMLMGVLYGCSGHETKGEEKTEPNTAQKAAKQSKQQAEHDPSSKWVKVKSPARIP
CHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCE
ILMYHSISSGNSLRVPEGEFRGHMKWLKDNGYYTLTPEEAYIVLTQDKMPSDKCVLITFD
EEEEEECCCCCEECCCCHHHHCCEEEEECCCEEEECCCCEEEEEECCCCCCCCEEEEEEC
DGYTDNFEKAYPILKGYGMKATIFMIGKSVGGKNHLTEKQMNEMRRNGISIQSHTIHHVE
CCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEE
LNGLAPGQQLDEMTRSKALFDRMFSQNTVMLSYPVGRYNEDTLKLAKQAGYQMAVTTEPG
ECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCC
AASRDQGMYALHRVRISPGMSPDAFGKMVEHSRQ
CCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MLLVLSMLMGVLYGCSGHETKGEEKTEPNTAQKAAKQSKQQAEHDPSSKWVKVKSPARIP
CHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCE
ILMYHSISSGNSLRVPEGEFRGHMKWLKDNGYYTLTPEEAYIVLTQDKMPSDKCVLITFD
EEEEEECCCCCEECCCCHHHHCCEEEEECCCEEEECCCCEEEEEECCCCCCCCEEEEEEC
DGYTDNFEKAYPILKGYGMKATIFMIGKSVGGKNHLTEKQMNEMRRNGISIQSHTIHHVE
CCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEE
LNGLAPGQQLDEMTRSKALFDRMFSQNTVMLSYPVGRYNEDTLKLAKQAGYQMAVTTEPG
ECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCC
AASRDQGMYALHRVRISPGMSPDAFGKMVEHSRQ
CCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]