| Definition | Bacillus licheniformis ATCC 14580, complete genome. |
|---|---|
| Accession | NC_006322 |
| Length | 4,222,645 |
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The map label for this gene is licR [H]
Identifier: 52787767
GI number: 52787767
Start: 3914230
End: 3916179
Strand: Reverse
Name: licR [H]
Synonym: BLi04090
Alternate gene names: 52787767
Gene position: 3916179-3914230 (Counterclockwise)
Preceding gene: 52787768
Following gene: 52787766
Centisome position: 92.74
GC content: 46.56
Gene sequence:
>1950_bases ATGCTCAATGCTCGGCTTAAGCTTATCCTCGGCGAATTGATAGGGGCAGAATCACCATTAACCAGCGCATATTTGGCCAA TGAGCTAAATGTGACCTCTCGGACGATCAGATCAGATGTGAAAGAATTAGACCGGCTTCTCTCCAAAAACGGCGCTGCCG TCCAATCGATCAGGGGTGCAGGCTATCGGCTCTCCATCAAGAATGACCGCCTCTTTCGCCAGCTTCTGCAGCACACATTT CATCAAGAGCTTTCTACTCCCGTTTTTCCAAATGAGCGTATTCTCTATTTATTAAAAAGGCTTCTCTTAACTGAGGAGTA TGTCAAACTTGAAGATTTAGCCGCTGAGATGTATATCAGCAAATCGACGGTCCAAAACGATATGAGAGATGTGAAGAAAA GGCTTAAACCTTACGACATTGAGCTGAAGATCAAGCCGAATTACGGCTTTAAGCTGAAGGGAGATGAGATGAAGCTGCGA TCGTGCATCGCAGAGCACCTTTTTCCAAAGCGGGAAACGGATATTGATATTATGAACACCCGGATATCCATTCTCCCAAA AGAAGAGCTTGCTATGATCCGTCAAACGATTTTAGAAAAAATAAGCGAAGATCAAATTTCTCTTTCAGATATCGGACTAA ACAATCTTCTCATCCACGTCGCCATTGCATGCAAACGCATCCGAAGCGGCAAACATGTTTCTCTTTATTCCAAAGATGTA AAGGAGATTATGAATCATAAAGAATATGAAGTGGCGAGGGCGATTGTCCGCACTCTTGAACAAAAGCTGCACGTGGCGTT TCCAGAAAAAGAAACGGCCTACATCGCCATCCATTTGCTTGGCGCGAAAAGGACGGTTATGGCCGCCATTCGCAGCGGTG CAATCGAAAGCATGATGGATGAAGAAGAGACAGACCGGCTGACGCAATTGATCATGAAAACCATCGATCAAAAATTCACC CTCGGCATTGGGGATGACAAAGAATTAAAAATCGGTCTCGGCCTTCACCTAAAACCGGCTTTGAATCGCTGCAGATACGG CATGAATATCAGAAATCCAATGCTGGATGCAATTAAGGCCAATTATCCGCTCGCATTTGAAGCGGGTATTCAAGCCGGTG AAGTCATCAAAAGAGAGACGGGATTTGACATTCAGGAAAGCGAGGTCGGCTACCTCGCGTTGCATATAGGCGCAGCCATG GAAAGAAGAAACATGAACAGGCCCTCAAAACGCTGTATGATTGTCTGTGCTTCAGGGGCCGGAAGCGCCATGCTGCTTCA GGACAGACTGCGGGCAACATTCGGTTCAAAGCTTGAGATCCTTGGAACGGTTGATTACTACAAGCTGAATCAAATGTCGC TCCATGCACTCGACTTTGTTATCAGCACAATACCGCTGTCCGATGATCTTCCCATTCCGGTGATTCAAGTAAACACAATA CTGGGAGGGGGAGATTTAACGAAAATAGAACAAGTGCTTGCCGAAGATGACGGAATCGCTTCGACTTATACGAGAAAAGA GCTTGTCTTTTTGCGGGAAAGTCTGTCTTCAAGAGAGGATGTCCTTCGCTTTCTGTGCGGAAAAGTGACGCAATCAGGGC TTGCAGACGCGGGGCTTGAAGCCTCGGTCTTTGAACGGGAGGCCGTTGCGCCCACTTGCTTCGGCAATCTGGTTGCGATT CCGCATCCGATGACACCAAAAACCGCTTCAACTTTTTGGGCGGTTTGCACGCTGCAAAAACCGATAGTCTGGGAGAATAA GAGGGTTCAATTCGTCTGCCTTCTTTGTGTAGAAAAGGACAATACAGCAAATTTGCAGGAGATGTACAAATTTTTGGGCC GTGTTTTAGATGACAGGGCGATTGTCCGGGAACTCCTGAAATGCAAAACGTACGGGGAGTTTATGTCCGTCTTTAAAAAA AGCGGGCCGGCTCATCGATATGCCAAATGA
Upstream 100 bases:
>100_bases ATTTACTTAACTATGAGACAAATTTCACAAAAAAAATGAATATACCTGAGTGTATAGGTTTGTTCTCGGTTCAAGTATCT TAGTGGGAGGGTCTTTTTCT
Downstream 100 bases:
>100_bases AGATGTCCCCTTGTCTTTTTTCCTCTTCGCTGAGGAAAATCATTAAGTGTATATGAAAACGGTTTCATTATATGATGAAA CTGTAAGAGAGATCAGACAA
Product: LicR
Products: NA
Alternate protein names: Putative phosphotransferase enzyme IIB component; Putative PTS system EIIB component; Putative phosphotransferase enzyme IIA component; Putative PTS system EIIA component [H]
Number of amino acids: Translated: 649; Mature: 649
Protein sequence:
>649_residues MLNARLKLILGELIGAESPLTSAYLANELNVTSRTIRSDVKELDRLLSKNGAAVQSIRGAGYRLSIKNDRLFRQLLQHTF HQELSTPVFPNERILYLLKRLLLTEEYVKLEDLAAEMYISKSTVQNDMRDVKKRLKPYDIELKIKPNYGFKLKGDEMKLR SCIAEHLFPKRETDIDIMNTRISILPKEELAMIRQTILEKISEDQISLSDIGLNNLLIHVAIACKRIRSGKHVSLYSKDV KEIMNHKEYEVARAIVRTLEQKLHVAFPEKETAYIAIHLLGAKRTVMAAIRSGAIESMMDEEETDRLTQLIMKTIDQKFT LGIGDDKELKIGLGLHLKPALNRCRYGMNIRNPMLDAIKANYPLAFEAGIQAGEVIKRETGFDIQESEVGYLALHIGAAM ERRNMNRPSKRCMIVCASGAGSAMLLQDRLRATFGSKLEILGTVDYYKLNQMSLHALDFVISTIPLSDDLPIPVIQVNTI LGGGDLTKIEQVLAEDDGIASTYTRKELVFLRESLSSREDVLRFLCGKVTQSGLADAGLEASVFEREAVAPTCFGNLVAI PHPMTPKTASTFWAVCTLQKPIVWENKRVQFVCLLCVEKDNTANLQEMYKFLGRVLDDRAIVRELLKCKTYGEFMSVFKK SGPAHRYAK
Sequences:
>Translated_649_residues MLNARLKLILGELIGAESPLTSAYLANELNVTSRTIRSDVKELDRLLSKNGAAVQSIRGAGYRLSIKNDRLFRQLLQHTF HQELSTPVFPNERILYLLKRLLLTEEYVKLEDLAAEMYISKSTVQNDMRDVKKRLKPYDIELKIKPNYGFKLKGDEMKLR SCIAEHLFPKRETDIDIMNTRISILPKEELAMIRQTILEKISEDQISLSDIGLNNLLIHVAIACKRIRSGKHVSLYSKDV KEIMNHKEYEVARAIVRTLEQKLHVAFPEKETAYIAIHLLGAKRTVMAAIRSGAIESMMDEEETDRLTQLIMKTIDQKFT LGIGDDKELKIGLGLHLKPALNRCRYGMNIRNPMLDAIKANYPLAFEAGIQAGEVIKRETGFDIQESEVGYLALHIGAAM ERRNMNRPSKRCMIVCASGAGSAMLLQDRLRATFGSKLEILGTVDYYKLNQMSLHALDFVISTIPLSDDLPIPVIQVNTI LGGGDLTKIEQVLAEDDGIASTYTRKELVFLRESLSSREDVLRFLCGKVTQSGLADAGLEASVFEREAVAPTCFGNLVAI PHPMTPKTASTFWAVCTLQKPIVWENKRVQFVCLLCVEKDNTANLQEMYKFLGRVLDDRAIVRELLKCKTYGEFMSVFKK SGPAHRYAK >Mature_649_residues MLNARLKLILGELIGAESPLTSAYLANELNVTSRTIRSDVKELDRLLSKNGAAVQSIRGAGYRLSIKNDRLFRQLLQHTF HQELSTPVFPNERILYLLKRLLLTEEYVKLEDLAAEMYISKSTVQNDMRDVKKRLKPYDIELKIKPNYGFKLKGDEMKLR SCIAEHLFPKRETDIDIMNTRISILPKEELAMIRQTILEKISEDQISLSDIGLNNLLIHVAIACKRIRSGKHVSLYSKDV KEIMNHKEYEVARAIVRTLEQKLHVAFPEKETAYIAIHLLGAKRTVMAAIRSGAIESMMDEEETDRLTQLIMKTIDQKFT LGIGDDKELKIGLGLHLKPALNRCRYGMNIRNPMLDAIKANYPLAFEAGIQAGEVIKRETGFDIQESEVGYLALHIGAAM ERRNMNRPSKRCMIVCASGAGSAMLLQDRLRATFGSKLEILGTVDYYKLNQMSLHALDFVISTIPLSDDLPIPVIQVNTI LGGGDLTKIEQVLAEDDGIASTYTRKELVFLRESLSSREDVLRFLCGKVTQSGLADAGLEASVFEREAVAPTCFGNLVAI PHPMTPKTASTFWAVCTLQKPIVWENKRVQFVCLLCVEKDNTANLQEMYKFLGRVLDDRAIVRELLKCKTYGEFMSVFKK SGPAHRYAK
Specific function: Positive regulator of the licABCH operon [H]
COG id: COG3711
COG function: function code K; Transcriptional antiterminator
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIIB type-2 domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013196 - InterPro: IPR007737 - InterPro: IPR011608 - InterPro: IPR016152 - InterPro: IPR002178 - InterPro: IPR013011 - InterPro: IPR003501 - InterPro: IPR011991 [H]
Pfam domain/function: PF08279 HTH_11; PF05043 Mga; PF00874 PRD; PF00359 PTS_EIIA_2; PF02302 PTS_IIB [H]
EC number: =2.7.1.69 [H]
Molecular weight: Translated: 73242; Mature: 73242
Theoretical pI: Translated: 8.88; Mature: 8.88
Prosite motif: PS51094 PTS_EIIA_TYPE_2 ; PS51099 PTS_EIIB_TYPE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNARLKLILGELIGAESPLTSAYLANELNVTSRTIRSDVKELDRLLSKNGAAVQSIRGA CCCCHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC GYRLSIKNDRLFRQLLQHTFHQELSTPVFPNERILYLLKRLLLTEEYVKLEDLAAEMYIS CEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KSTVQNDMRDVKKRLKPYDIELKIKPNYGFKLKGDEMKLRSCIAEHLFPKRETDIDIMNT HHHHHHHHHHHHHHCCCCEEEEEEECCCCEEECCCHHHHHHHHHHHCCCCCCCCCEEECC RISILPKEELAMIRQTILEKISEDQISLSDIGLNNLLIHVAIACKRIRSGKHVSLYSKDV EEEECCHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCEEEHHHHHH KEIMNHKEYEVARAIVRTLEQKLHVAFPEKETAYIAIHLLGAKRTVMAAIRSGAIESMMD HHHHCCHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHC EEETDRLTQLIMKTIDQKFTLGIGDDKELKIGLGLHLKPALNRCRYGMNIRNPMLDAIKA HHHHHHHHHHHHHHHCCCEEECCCCCCCEEEECCCEEHHHHHHHHCCCCCCCHHHHHHHC NYPLAFEAGIQAGEVIKRETGFDIQESEVGYLALHIGAAMERRNMNRPSKRCMIVCASGA CCCEEEECCCCHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCEEEEEEECCC GSAMLLQDRLRATFGSKLEILGTVDYYKLNQMSLHALDFVISTIPLSDDLPIPVIQVNTI CCHHHHHHHHHHHHCCCEEEEEECCEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEE LGGGDLTKIEQVLAEDDGIASTYTRKELVFLRESLSSREDVLRFLCGKVTQSGLADAGLE ECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHCCCC ASVFEREAVAPTCFGNLVAIPHPMTPKTASTFWAVCTLQKPIVWENKRVQFVCLLCVEKD HHHHHHHCCCCHHCCCEEECCCCCCCCCHHHHEEEEEECCCCEECCCCEEEEEEEEEECC NTANLQEMYKFLGRVLDDRAIVRELLKCKTYGEFMSVFKKSGPAHRYAK CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MLNARLKLILGELIGAESPLTSAYLANELNVTSRTIRSDVKELDRLLSKNGAAVQSIRGA CCCCHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC GYRLSIKNDRLFRQLLQHTFHQELSTPVFPNERILYLLKRLLLTEEYVKLEDLAAEMYIS CEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KSTVQNDMRDVKKRLKPYDIELKIKPNYGFKLKGDEMKLRSCIAEHLFPKRETDIDIMNT HHHHHHHHHHHHHHCCCCEEEEEEECCCCEEECCCHHHHHHHHHHHCCCCCCCCCEEECC RISILPKEELAMIRQTILEKISEDQISLSDIGLNNLLIHVAIACKRIRSGKHVSLYSKDV EEEECCHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCEEEHHHHHH KEIMNHKEYEVARAIVRTLEQKLHVAFPEKETAYIAIHLLGAKRTVMAAIRSGAIESMMD HHHHCCHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHC EEETDRLTQLIMKTIDQKFTLGIGDDKELKIGLGLHLKPALNRCRYGMNIRNPMLDAIKA HHHHHHHHHHHHHHHCCCEEECCCCCCCEEEECCCEEHHHHHHHHCCCCCCCHHHHHHHC NYPLAFEAGIQAGEVIKRETGFDIQESEVGYLALHIGAAMERRNMNRPSKRCMIVCASGA CCCEEEECCCCHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCEEEEEEECCC GSAMLLQDRLRATFGSKLEILGTVDYYKLNQMSLHALDFVISTIPLSDDLPIPVIQVNTI CCHHHHHHHHHHHHCCCEEEEEECCEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEE LGGGDLTKIEQVLAEDDGIASTYTRKELVFLRESLSSREDVLRFLCGKVTQSGLADAGLE ECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHCCCC ASVFEREAVAPTCFGNLVAIPHPMTPKTASTFWAVCTLQKPIVWENKRVQFVCLLCVEKD HHHHHHHCCCCHHCCCEEECCCCCCCCCHHHHEEEEEECCCCEECCCCEEEEEEEEEECC NTANLQEMYKFLGRVLDDRAIVRELLKCKTYGEFMSVFKKSGPAHRYAK CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8990303; 8969509; 9384377; 10438772 [H]