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The map label for this gene is dapA [H]

Identifier: 52787386

GI number: 52787386

Start: 3530296

End: 3531183

Strand: Reverse

Name: dapA [H]

Synonym: BLi03702

Alternate gene names: 52787386

Gene position: 3531183-3530296 (Counterclockwise)

Preceding gene: 52787387

Following gene: 52787385

Centisome position: 83.62

GC content: 47.86

Gene sequence:

>888_bases
ATGGGATTCGTACCAAAGGGGATTTATCCTGCTATGCTGACACCGCTCACAAAAGATCAAAGCATTGATGAATCGGCATT
GAAACAGCTGACAAACCATTTGATCGATGCTCATGTACACGGGCTTTTTGCGTTGGGTACCAACGGGGAATTTCATATGT
TCAACATCGAAGACAAGCTGAAAGTTGCAGAAATCATCATTCAAGAAACGGCCGAACGCGTTCCCGTCATGGTAGGGAGC
GGAGGAAACAGCACAGAAGAAGCGATCTGGCTTTCTAAGGAAATAGAGAGGCTTGGAGCAGATGCGCTGTCGGTCATCAC
GCCATTCTTTATTCCACCGACACAGGAAGAAGCGGCGGTGCATTATAAAACAATCGCGGCATCCGTTTCACTTCCGATCC
TTTTGTACAATATCCCTTCAAAAACAGGTTTCCATTTAGAACCAGAAACAGTGGCAGAGCTTGCAAAAGTGGACAATATC
GTTGGAATTAAGGACAGCAGCGGAAACTTTGAAAACATACAACAGTATATCGAGCAGACGAAAAATGACGACTTTTCCGT
TTTTGCAGGCACCGATTCGCTCATATTGAAAACGCTTCAAGCGGGAGGAGCGGGAGCAGTCGCAGCAACAGCAAATATGC
TTCCGGATATCGTAACGTCTATTTACCACCATTGGGCAGAGGGTGAGACTGAAAAGGCGGAGGCTGCCCAGATGGAGCTT
CAGCCGCTTCGCGATACGTTTCGTTTAGGTACGATCCCGGCGGCACTGAAAAAAGCGGTTGAGCTTTATTCGATCCCTGT
AGGCCCGCCGAAAGCGCCCGTCAAAGAACTGACCGGTCCGGCGCTTTTGGAGGTCGAAAAAATGGTTGCTTCCTATCAAT
CAAAATAG

Upstream 100 bases:

>100_bases
GCAACAACAAATAAAAATATTTAGATAAATACCGTTGATTATTGAAACATTTATGTATATAATCATTTTTGAAAACGCTT
TATAGGAAGGGGAGGCAATA

Downstream 100 bases:

>100_bases
GGAGGTTTCAAGAATGCCAGCGAATTATCAATTTCGGACAGCCGGTCATATCGTTGCAGGTGAACATTCCATCCGCCGGC
TGAAAGATCATGTGCGAACG

Product: hypothetical protein

Products: NA

Alternate protein names: DHDPS [H]

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MGFVPKGIYPAMLTPLTKDQSIDESALKQLTNHLIDAHVHGLFALGTNGEFHMFNIEDKLKVAEIIIQETAERVPVMVGS
GGNSTEEAIWLSKEIERLGADALSVITPFFIPPTQEEAAVHYKTIAASVSLPILLYNIPSKTGFHLEPETVAELAKVDNI
VGIKDSSGNFENIQQYIEQTKNDDFSVFAGTDSLILKTLQAGGAGAVAATANMLPDIVTSIYHHWAEGETEKAEAAQMEL
QPLRDTFRLGTIPAALKKAVELYSIPVGPPKAPVKELTGPALLEVEKMVASYQSK

Sequences:

>Translated_295_residues
MGFVPKGIYPAMLTPLTKDQSIDESALKQLTNHLIDAHVHGLFALGTNGEFHMFNIEDKLKVAEIIIQETAERVPVMVGS
GGNSTEEAIWLSKEIERLGADALSVITPFFIPPTQEEAAVHYKTIAASVSLPILLYNIPSKTGFHLEPETVAELAKVDNI
VGIKDSSGNFENIQQYIEQTKNDDFSVFAGTDSLILKTLQAGGAGAVAATANMLPDIVTSIYHHWAEGETEKAEAAQMEL
QPLRDTFRLGTIPAALKKAVELYSIPVGPPKAPVKELTGPALLEVEKMVASYQSK
>Mature_294_residues
GFVPKGIYPAMLTPLTKDQSIDESALKQLTNHLIDAHVHGLFALGTNGEFHMFNIEDKLKVAEIIIQETAERVPVMVGSG
GNSTEEAIWLSKEIERLGADALSVITPFFIPPTQEEAAVHYKTIAASVSLPILLYNIPSKTGFHLEPETVAELAKVDNIV
GIKDSSGNFENIQQYIEQTKNDDFSVFAGTDSLILKTLQAGGAGAVAATANMLPDIVTSIYHHWAEGETEKAEAAQMELQ
PLRDTFRLGTIPAALKKAVELYSIPVGPPKAPVKELTGPALLEVEKMVASYQSK

Specific function: Unknown

COG id: COG0329

COG function: function code EM; Dihydrodipicolinate synthase/N-acetylneuraminate lyase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHDPS family [H]

Homologues:

Organism=Homo sapiens, GI31543060, Length=285, Percent_Identity=31.5789473684211, Blast_Score=145, Evalue=4e-35,
Organism=Homo sapiens, GI13540533, Length=279, Percent_Identity=26.8817204301075, Blast_Score=109, Evalue=2e-24,
Organism=Escherichia coli, GI87082415, Length=265, Percent_Identity=35.8490566037736, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1786463, Length=278, Percent_Identity=33.4532374100719, Blast_Score=160, Evalue=8e-41,
Organism=Escherichia coli, GI1788823, Length=251, Percent_Identity=33.0677290836653, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1789620, Length=282, Percent_Identity=27.6595744680851, Blast_Score=125, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005263
- InterPro:   IPR002220
- InterPro:   IPR020625
- InterPro:   IPR020624 [H]

Pfam domain/function: PF00701 DHDPS [H]

EC number: =4.2.1.52 [H]

Molecular weight: Translated: 31936; Mature: 31805

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS00666 DHDPS_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFVPKGIYPAMLTPLTKDQSIDESALKQLTNHLIDAHVHGLFALGTNGEFHMFNIEDKL
CCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEECHHHH
KVAEIIIQETAERVPVMVGSGGNSTEEAIWLSKEIERLGADALSVITPFFIPPTQEEAAV
HHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHH
HYKTIAASVSLPILLYNIPSKTGFHLEPETVAELAKVDNIVGIKDSSGNFENIQQYIEQT
HHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHH
KNDDFSVFAGTDSLILKTLQAGGAGAVAATANMLPDIVTSIYHHWAEGETEKAEAAQMEL
CCCCEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
QPLRDTFRLGTIPAALKKAVELYSIPVGPPKAPVKELTGPALLEVEKMVASYQSK
HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GFVPKGIYPAMLTPLTKDQSIDESALKQLTNHLIDAHVHGLFALGTNGEFHMFNIEDKL
CCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEECHHHH
KVAEIIIQETAERVPVMVGSGGNSTEEAIWLSKEIERLGADALSVITPFFIPPTQEEAAV
HHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHH
HYKTIAASVSLPILLYNIPSKTGFHLEPETVAELAKVDNIVGIKDSSGNFENIQQYIEQT
HHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHH
KNDDFSVFAGTDSLILKTLQAGGAGAVAATANMLPDIVTSIYHHWAEGETEKAEAAQMEL
CCCCEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
QPLRDTFRLGTIPAALKKAVELYSIPVGPPKAPVKELTGPALLEVEKMVASYQSK
HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11930014 [H]