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The map label for this gene is yukF [H]

Identifier: 52787076

GI number: 52787076

Start: 3234233

End: 3235471

Strand: Direct

Name: yukF [H]

Synonym: BLi03381

Alternate gene names: 52787076

Gene position: 3234233-3235471 (Clockwise)

Preceding gene: 52787066

Following gene: 52787077

Centisome position: 76.59

GC content: 46.81

Gene sequence:

>1239_bases
ATGAACAATCGAAACAATCCTTTTAAATATCAATATGACCGTTTAGAAGATGTGGCAGATCATATCAGCGAGGTGCTGGA
CTGTCCGATTACGATAGAAGACATCAACCACCGCCTCCTTGCTTACAGCACCCACAGCGACTACACGGACCCGGCGAGAA
CGTCAACAATCATCGGAAGGCGCGTTCCGGAAAAAGTCATCAACAAGCTTTGGAAGGATGGAACGATTCCCGCCTTGATG
AAAACCGACGAACCGATCAGGGTCGAACAAATCGATGAAGTCGGCCTGTCGAGCCGCGTGGCGATTTCAATCTGGAAAAA
CAGCGAGGTTATCGGTTTTATCTGGGCGCTGGAAAGCCAAAAAACGCTGTCGGAAGACGAGCTTCACCTTTTGAAGCTGG
CCGCGGATTCCGTAAAGAACAAGCTGCTGCCTTATCAGGTCCGAAAAAGAAAAAATGAACAGCGCAGCCAGGAATTTTTC
TGGAAGCTATTGACCGGGCACATTTCGGAAGATCAGGAAATCTCCGACGGCTTTCACCAGCTTGGCATCGGAGTTCCTTC
AACTTATTCGGTCATCATCATCCGGCTGAAAGACGAAATCGAAGAAAAAACCGAAAAGCAGCTCCATTACTTGCTGGAAA
CGACGCAGCAGCTGCAAATCCTTCTGGCTACAATCGACTATAATGAGCTGATTGTCCTCGCTTCGCCAAAAACGGGGCAA
AAAGGGCAGCCGTTCAATGATTTAAAGCAATTTGCCGCGAATATACAAAAGCAACTTGAAGAGCGCTATAAACTGAATAA
CTGCACGATCGCGATCGGCGGAATGTACAGCTTGATCACCCTTGTACACCAGTCTTATCAGGAAGCGCTCTCGGCGCTGA
AGGTCAAGGAGCGTTTTCCCGATGAGACAAGGCACCTCGTCAGCTTTTCAGAGCTCGGCATCTACCAGTATCTCGACGTG
CTCAGCGAAAAACGGAAACATGCAAGCTATCCAAACTATTCTTTAATGCAGCTTGAAGCATATGATAAAGAGCACCACTC
CAATCTTGTCGAGACGCTTGAACAATTCATCGAATGCGACAGCAACGTCAACACCGCCGCAAAAAAGCTGAACATTCACG
TCAACACGCTGAATTACAGGCTGAAACGCATCAGCAAAATCGCCGAAATCGATTTAAAAAACATCAATGAAAAATTTACG
ATTTATCTTGAAATCAAGCTTCGCAACATGCATTTGTGA

Upstream 100 bases:

>100_bases
ACTTTTTTGTTGATTTTAACAAACAACTATATTCATAATAAAAGTAAGATGGGTATATGTCAAAATTTTTTCATGCAAAC
ATAAAAAGTAGGGGTTTTTT

Downstream 100 bases:

>100_bases
AATTCCACAAATGCATGTTTTTTTATTTTTCGATTCAAACAAAGAAAATTCTAAAAAGTCAGTATAAACTAAAGCAACAG
CATTTTTACAGAAAAAGGAG

Product: YukF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MNNRNNPFKYQYDRLEDVADHISEVLDCPITIEDINHRLLAYSTHSDYTDPARTSTIIGRRVPEKVINKLWKDGTIPALM
KTDEPIRVEQIDEVGLSSRVAISIWKNSEVIGFIWALESQKTLSEDELHLLKLAADSVKNKLLPYQVRKRKNEQRSQEFF
WKLLTGHISEDQEISDGFHQLGIGVPSTYSVIIIRLKDEIEEKTEKQLHYLLETTQQLQILLATIDYNELIVLASPKTGQ
KGQPFNDLKQFAANIQKQLEERYKLNNCTIAIGGMYSLITLVHQSYQEALSALKVKERFPDETRHLVSFSELGIYQYLDV
LSEKRKHASYPNYSLMQLEAYDKEHHSNLVETLEQFIECDSNVNTAAKKLNIHVNTLNYRLKRISKIAEIDLKNINEKFT
IYLEIKLRNMHL

Sequences:

>Translated_412_residues
MNNRNNPFKYQYDRLEDVADHISEVLDCPITIEDINHRLLAYSTHSDYTDPARTSTIIGRRVPEKVINKLWKDGTIPALM
KTDEPIRVEQIDEVGLSSRVAISIWKNSEVIGFIWALESQKTLSEDELHLLKLAADSVKNKLLPYQVRKRKNEQRSQEFF
WKLLTGHISEDQEISDGFHQLGIGVPSTYSVIIIRLKDEIEEKTEKQLHYLLETTQQLQILLATIDYNELIVLASPKTGQ
KGQPFNDLKQFAANIQKQLEERYKLNNCTIAIGGMYSLITLVHQSYQEALSALKVKERFPDETRHLVSFSELGIYQYLDV
LSEKRKHASYPNYSLMQLEAYDKEHHSNLVETLEQFIECDSNVNTAAKKLNIHVNTLNYRLKRISKIAEIDLKNINEKFT
IYLEIKLRNMHL
>Mature_412_residues
MNNRNNPFKYQYDRLEDVADHISEVLDCPITIEDINHRLLAYSTHSDYTDPARTSTIIGRRVPEKVINKLWKDGTIPALM
KTDEPIRVEQIDEVGLSSRVAISIWKNSEVIGFIWALESQKTLSEDELHLLKLAADSVKNKLLPYQVRKRKNEQRSQEFF
WKLLTGHISEDQEISDGFHQLGIGVPSTYSVIIIRLKDEIEEKTEKQLHYLLETTQQLQILLATIDYNELIVLASPKTGQ
KGQPFNDLKQFAANIQKQLEERYKLNNCTIAIGGMYSLITLVHQSYQEALSALKVKERFPDETRHLVSFSELGIYQYLDV
LSEKRKHASYPNYSLMQLEAYDKEHHSNLVETLEQFIECDSNVNTAAKKLNIHVNTLNYRLKRISKIAEIDLKNINEKFT
IYLEIKLRNMHL

Specific function: Seems To Regulate The Expression Of The Operons For The Enzymes Involved In D-Galactarate, D-Glucarate And D-Glycerate Utilization. [C]

COG id: COG2508

COG function: function code TQ; Regulator of polyketide synthase expression

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010312 [H]

Pfam domain/function: PF06018 CodY [H]

EC number: NA

Molecular weight: Translated: 47845; Mature: 47845

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNRNNPFKYQYDRLEDVADHISEVLDCPITIEDINHRLLAYSTHSDYTDPARTSTIIGR
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCCCCCCCHHHHHHHHH
RVPEKVINKLWKDGTIPALMKTDEPIRVEQIDEVGLSSRVAISIWKNSEVIGFIWALESQ
CCHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHCCCCCEEEEEEECCCCEEEEEEEECCC
KTLSEDELHLLKLAADSVKNKLLPYQVRKRKNEQRSQEFFWKLLTGHISEDQEISDGFHQ
CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
LGIGVPSTYSVIIIRLKDEIEEKTEKQLHYLLETTQQLQILLATIDYNELIVLASPKTGQ
HCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCCCCC
KGQPFNDLKQFAANIQKQLEERYKLNNCTIAIGGMYSLITLVHQSYQEALSALKVKERFP
CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC
DETRHLVSFSELGIYQYLDVLSEKRKHASYPNYSLMQLEAYDKEHHSNLVETLEQFIECD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHCHHHHHHHHHHHHHHHHCC
SNVNTAAKKLNIHVNTLNYRLKRISKIAEIDLKNINEKFTIYLEIKLRNMHL
CCCCCHHHEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCC
>Mature Secondary Structure
MNNRNNPFKYQYDRLEDVADHISEVLDCPITIEDINHRLLAYSTHSDYTDPARTSTIIGR
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCCCCCCCHHHHHHHHH
RVPEKVINKLWKDGTIPALMKTDEPIRVEQIDEVGLSSRVAISIWKNSEVIGFIWALESQ
CCHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHCCCCCEEEEEEECCCCEEEEEEEECCC
KTLSEDELHLLKLAADSVKNKLLPYQVRKRKNEQRSQEFFWKLLTGHISEDQEISDGFHQ
CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
LGIGVPSTYSVIIIRLKDEIEEKTEKQLHYLLETTQQLQILLATIDYNELIVLASPKTGQ
HCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCCCCC
KGQPFNDLKQFAANIQKQLEERYKLNNCTIAIGGMYSLITLVHQSYQEALSALKVKERFP
CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC
DETRHLVSFSELGIYQYLDVLSEKRKHASYPNYSLMQLEAYDKEHHSNLVETLEQFIECD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHCHHHHHHHHHHHHHHHHCC
SNVNTAAKKLNIHVNTLNYRLKRISKIAEIDLKNINEKFTIYLEIKLRNMHL
CCCCCHHHEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9168598; 9384377 [H]