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The map label for this gene is ysdC [H]

Identifier: 52786760

GI number: 52786760

Start: 2916731

End: 2917816

Strand: Reverse

Name: ysdC [H]

Synonym: BLi03030

Alternate gene names: 52786760

Gene position: 2917816-2916731 (Counterclockwise)

Preceding gene: 52786762

Following gene: 52786759

Centisome position: 69.1

GC content: 50.0

Gene sequence:

>1086_bases
ATGGCAAAGCTTGATGAAACATTGATGATGCTAAAGGAATTAACTGATGCAAAAGGAATTCCGGCGAATGAAAAAGAACC
CAGACAAGTCATGAAATCGTACATAGAACCGTTTGCCGACGAGGTTACGACAGACAGACTGGGAAGCTTAATCGCAAAAA
AGACTGGACAGGCTGACGGACCGAAGATTATGATTGCCGGCCATCTTGATGAGGTCGGTTTTATGGTTACGCGGATCGAT
GACAGGGGCTATCTCCGCTTTCAGACGGTCGGAGGCTGGTGGAGCCAGGTCATGCTGGCGCAGCGTGTGACGGTCGTGAC
AAAGAAAGGCGACATCACCGGTATCATCGGTTCAAAGCCTCCTCATGTCCTGTCTCAGGAGGCGAGAAAAAAATCGGTCG
ATATTAAAGATATGTTTATCGACATCGGGGCGTCGAGCAGGGAGGAAGCGATGGAATGGGGCGTTCTTCCGGGAGACCAG
GTCGTCCCTTACTTTGAATTTACGGTGATGAATAATGAAAAAATGCTGCTTGCCAAAGCATGGGACAACCGTATCGGCTG
CGCGATCGCAATCGACGTGCTGAAAAACCTGAAAGGAGCCGATCATCCGAATGTCGTCTACGGCGTCGGAACCGTACAAG
AGGAAGTAGGGCTGAGAGGCGCGAAAACAGCCGCGCATACGATCAAGCCTGATATCGCTTTCGGTGTCGACGTGGGAATT
GCGGGTGATACGCCTGGTATTACCGAAAAAGAGTCGGCAAGCAAAATGGGAAAAGGCCCGCAGATCATACTTTATGATGC
ATCAATGGTGTCCCATAAAGGGCTTCGCGACTTTGTAACGAATGTGGCAGATGAAGCCGGCATTCCGTATCAATTTGACG
CCCTCTCAGGCGGAGGAACAGATTCAGGATCAATCCACCTTACCGCGAACGGAGTGCCTGCCCTGTCGATCACGATCGCG
ACGAGGTATATCCATACGCACGCGGCCATGCTTCACCGGGATGACTATGAACATGCGGTAAAATTAATTACCGAAGTCAT
TAAACGACTGGATAAAGAGACGGTTCAAAACATTACGTTTGACTGA

Upstream 100 bases:

>100_bases
CATTTTTTAACCAAAAAAGCTGTAAACGATATTGGTCGTATTGAAAAGGGATGTTTCTGTATAATAGTAAATGAGGGTTA
ATTAAGGAGGCTGTATAGAG

Downstream 100 bases:

>100_bases
TGAAAGAGCAGGCTGACAGCTTATCTTACAAGCTGTCAGCTTTTTTTGTTTTTTGGAATGTTAAAGACAGCGCTTACATA
TATAAACATTGTTCGAAAAA

Product: YsdC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MAKLDETLMMLKELTDAKGIPANEKEPRQVMKSYIEPFADEVTTDRLGSLIAKKTGQADGPKIMIAGHLDEVGFMVTRID
DRGYLRFQTVGGWWSQVMLAQRVTVVTKKGDITGIIGSKPPHVLSQEARKKSVDIKDMFIDIGASSREEAMEWGVLPGDQ
VVPYFEFTVMNNEKMLLAKAWDNRIGCAIAIDVLKNLKGADHPNVVYGVGTVQEEVGLRGAKTAAHTIKPDIAFGVDVGI
AGDTPGITEKESASKMGKGPQIILYDASMVSHKGLRDFVTNVADEAGIPYQFDALSGGGTDSGSIHLTANGVPALSITIA
TRYIHTHAAMLHRDDYEHAVKLITEVIKRLDKETVQNITFD

Sequences:

>Translated_361_residues
MAKLDETLMMLKELTDAKGIPANEKEPRQVMKSYIEPFADEVTTDRLGSLIAKKTGQADGPKIMIAGHLDEVGFMVTRID
DRGYLRFQTVGGWWSQVMLAQRVTVVTKKGDITGIIGSKPPHVLSQEARKKSVDIKDMFIDIGASSREEAMEWGVLPGDQ
VVPYFEFTVMNNEKMLLAKAWDNRIGCAIAIDVLKNLKGADHPNVVYGVGTVQEEVGLRGAKTAAHTIKPDIAFGVDVGI
AGDTPGITEKESASKMGKGPQIILYDASMVSHKGLRDFVTNVADEAGIPYQFDALSGGGTDSGSIHLTANGVPALSITIA
TRYIHTHAAMLHRDDYEHAVKLITEVIKRLDKETVQNITFD
>Mature_360_residues
AKLDETLMMLKELTDAKGIPANEKEPRQVMKSYIEPFADEVTTDRLGSLIAKKTGQADGPKIMIAGHLDEVGFMVTRIDD
RGYLRFQTVGGWWSQVMLAQRVTVVTKKGDITGIIGSKPPHVLSQEARKKSVDIKDMFIDIGASSREEAMEWGVLPGDQV
VPYFEFTVMNNEKMLLAKAWDNRIGCAIAIDVLKNLKGADHPNVVYGVGTVQEEVGLRGAKTAAHTIKPDIAFGVDVGIA
GDTPGITEKESASKMGKGPQIILYDASMVSHKGLRDFVTNVADEAGIPYQFDALSGGGTDSGSIHLTANGVPALSITIAT
RYIHTHAAMLHRDDYEHAVKLITEVIKRLDKETVQNITFD

Specific function: Putative aminopeptidase [H]

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

Organism=Escherichia coli, GI1790332, Length=349, Percent_Identity=40.4011461318052, Blast_Score=286, Evalue=2e-78,
Organism=Escherichia coli, GI1788727, Length=352, Percent_Identity=34.375, Blast_Score=204, Evalue=8e-54,
Organism=Escherichia coli, GI87082417, Length=343, Percent_Identity=31.1953352769679, Blast_Score=167, Evalue=8e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: NA

Molecular weight: Translated: 39336; Mature: 39204

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKLDETLMMLKELTDAKGIPANEKEPRQVMKSYIEPFADEVTTDRLGSLIAKKTGQADG
CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PKIMIAGHLDEVGFMVTRIDDRGYLRFQTVGGWWSQVMLAQRVTVVTKKGDITGIIGSKP
CEEEEEECCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHEEEEEECCCEEEECCCCC
PHVLSQEARKKSVDIKDMFIDIGASSREEAMEWGVLPGDQVVPYFEFTVMNNEKMLLAKA
CHHHHHHHHHHCCCHHHEEEECCCCCHHHHHHCCCCCCCCCCCEEEEEEECCCEEEEEEC
WDNRIGCAIAIDVLKNLKGADHPNVVYGVGTVQEEVGLRGAKTAAHTIKPDIAFGVDVGI
CCCCCCHHHHHHHHHHCCCCCCCCEEEECCCHHHHHCCCCCCHHHHHCCCCEEEEEEEEE
AGDTPGITEKESASKMGKGPQIILYDASMVSHKGLRDFVTNVADEAGIPYQFDALSGGGT
CCCCCCCCCCHHHHHCCCCCEEEEEECHHHHHCCHHHHHHHHHHHCCCCEEEECCCCCCC
DSGSIHLTANGVPALSITIATRYIHTHAAMLHRDDYEHAVKLITEVIKRLDKETVQNITF
CCCEEEEEECCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
D
C
>Mature Secondary Structure 
AKLDETLMMLKELTDAKGIPANEKEPRQVMKSYIEPFADEVTTDRLGSLIAKKTGQADG
CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PKIMIAGHLDEVGFMVTRIDDRGYLRFQTVGGWWSQVMLAQRVTVVTKKGDITGIIGSKP
CEEEEEECCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHEEEEEECCCEEEECCCCC
PHVLSQEARKKSVDIKDMFIDIGASSREEAMEWGVLPGDQVVPYFEFTVMNNEKMLLAKA
CHHHHHHHHHHCCCHHHEEEECCCCCHHHHHHCCCCCCCCCCCEEEEEEECCCEEEEEEC
WDNRIGCAIAIDVLKNLKGADHPNVVYGVGTVQEEVGLRGAKTAAHTIKPDIAFGVDVGI
CCCCCCHHHHHHHHHHCCCCCCCCEEEECCCHHHHHCCCCCCHHHHHCCCCEEEEEEEEE
AGDTPGITEKESASKMGKGPQIILYDASMVSHKGLRDFVTNVADEAGIPYQFDALSGGGT
CCCCCCCCCCHHHHHCCCCCEEEEEECHHHHHCCHHHHHHHHHHHCCCCEEEECCCCCCC
DSGSIHLTANGVPALSITIATRYIHTHAAMLHRDDYEHAVKLITEVIKRLDKETVQNITF
CCCEEEEEECCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
D
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]