Click here to switch to the map view.

The map label for this gene is sgaE [H]

Identifier: 52786756

GI number: 52786756

Start: 2911457

End: 2912143

Strand: Reverse

Name: sgaE [H]

Synonym: BLi03026

Alternate gene names: 52786756

Gene position: 2912143-2911457 (Counterclockwise)

Preceding gene: 52786757

Following gene: 52786755

Centisome position: 68.96

GC content: 51.67

Gene sequence:

>687_bases
GTGCTGGAATCTTTGAAAGAACAAGTATTAAAAGCGAATTTGCAGCTTGAAGAATACCGGCTTGTCACCTTTACATGGGG
AAATGTCAGCGGTATTGACCGGGAGAATAAGCTGGTCGTCATCAAGCCGAGCGGTGTCAAATACAGCGATTTGAAAGCCG
AAGATTTAGTGGTTCTGAATATGGACGGCGAGATTGTGGAAGGGGATCTGAAGCCATCTTCCGATACGCCGACACACCTC
TATCTTTACCGGCAGTTTCAATCGATCGGCGGGATCGTCCATACGCATTCCCCGTGGGCGACAAGCTGGGCTCAGTCAGG
GAAGGACATTCCGTCGCTCGGAACGACTCATGCCGACTACTACCACGGCGACATTCCGTGTACACGGGAAATGGATCCCG
ATGAAATCAGGAGTCAATACGAGCTGAATACAGGAAAAGTGATTGTAGAGACGTTCCGGCATCTTGACCCCCTGGCGGTG
CCCGCCGTTCTCGTGAACAATCACGGGCCGTTTTGCTGGGGAAAAGACGCCTTAACTGCCGTACACAATGCCGTCGTCCT
GGAAGAAGTCGCCAAGATGGCGTACCGCTCCCTGATGCTGAATCCGTCTCTTAAGCGGATTAAGAGCGCTTTGCAGGATA
AGCATTATTTTCGAAAGCACGGGGCAGACGCCTATTACGGCCAATAG

Upstream 100 bases:

>100_bases
AAAGCAAAACAATGTGATGAAACGCCTTAAAAAATTGAAAAACATCCAGTCCCTTAGTTCTGACACCGGTAAAGCGATGG
CTTAGAGGGAGGAGAAAACT

Downstream 100 bases:

>100_bases
AGGAGGGAAGCTGCCAATGAATGACTTGATCTCTTATGTGAAAAAAACTTTGGGCGCATGCGAATGCGGAACCGTCCACC
ACCCGCTTACAGTCGAAAAA

Product: L-ribulose-5-phosphate 4-epimerase

Products: NA

Alternate protein names: Phosphoribulose isomerase [H]

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MLESLKEQVLKANLQLEEYRLVTFTWGNVSGIDRENKLVVIKPSGVKYSDLKAEDLVVLNMDGEIVEGDLKPSSDTPTHL
YLYRQFQSIGGIVHTHSPWATSWAQSGKDIPSLGTTHADYYHGDIPCTREMDPDEIRSQYELNTGKVIVETFRHLDPLAV
PAVLVNNHGPFCWGKDALTAVHNAVVLEEVAKMAYRSLMLNPSLKRIKSALQDKHYFRKHGADAYYGQ

Sequences:

>Translated_228_residues
MLESLKEQVLKANLQLEEYRLVTFTWGNVSGIDRENKLVVIKPSGVKYSDLKAEDLVVLNMDGEIVEGDLKPSSDTPTHL
YLYRQFQSIGGIVHTHSPWATSWAQSGKDIPSLGTTHADYYHGDIPCTREMDPDEIRSQYELNTGKVIVETFRHLDPLAV
PAVLVNNHGPFCWGKDALTAVHNAVVLEEVAKMAYRSLMLNPSLKRIKSALQDKHYFRKHGADAYYGQ
>Mature_228_residues
MLESLKEQVLKANLQLEEYRLVTFTWGNVSGIDRENKLVVIKPSGVKYSDLKAEDLVVLNMDGEIVEGDLKPSSDTPTHL
YLYRQFQSIGGIVHTHSPWATSWAQSGKDIPSLGTTHADYYHGDIPCTREMDPDEIRSQYELNTGKVIVETFRHLDPLAV
PAVLVNNHGPFCWGKDALTAVHNAVVLEEVAKMAYRSLMLNPSLKRIKSALQDKHYFRKHGADAYYGQ

Specific function: Probable Pentulose-5-Phosphate-4-Epimerase. Probably Involved In A Metabolic Pathway With Sgah And Sgau. [C]

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. AraD/FucA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790642, Length=227, Percent_Identity=62.1145374449339, Blast_Score=308, Evalue=2e-85,
Organism=Escherichia coli, GI1786247, Length=231, Percent_Identity=61.038961038961, Blast_Score=284, Evalue=4e-78,
Organism=Escherichia coli, GI1790008, Length=231, Percent_Identity=59.7402597402597, Blast_Score=283, Evalue=7e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303
- InterPro:   IPR004661 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: =5.1.3.4 [H]

Molecular weight: Translated: 25682; Mature: 25682

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLESLKEQVLKANLQLEEYRLVTFTWGNVSGIDRENKLVVIKPSGVKYSDLKAEDLVVLN
CHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCCEECCCCCCCEEEEC
MDGEIVEGDLKPSSDTPTHLYLYRQFQSIGGIVHTHSPWATSWAQSGKDIPSLGTTHADY
CCCCEEECCCCCCCCCCCEEHHHHHHHHHCCEEECCCCCHHHHHHCCCCCCCCCCCCCCE
YHGDIPCTREMDPDEIRSQYELNTGKVIVETFRHLDPLAVPAVLVNNHGPFCWGKDALTA
EECCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCHHHCEEEECCCCCCEECHHHHHH
VHNAVVLEEVAKMAYRSLMLNPSLKRIKSALQDKHYFRKHGADAYYGQ
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLESLKEQVLKANLQLEEYRLVTFTWGNVSGIDRENKLVVIKPSGVKYSDLKAEDLVVLN
CHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCCEECCCCCCCEEEEC
MDGEIVEGDLKPSSDTPTHLYLYRQFQSIGGIVHTHSPWATSWAQSGKDIPSLGTTHADY
CCCCEEECCCCCCCCCCCEEHHHHHHHHHCCEEECCCCCHHHHHHCCCCCCCCCCCCCCE
YHGDIPCTREMDPDEIRSQYELNTGKVIVETFRHLDPLAVPAVLVNNHGPFCWGKDALTA
EECCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCHHHCEEEECCCCCCEECHHHHHH
VHNAVVLEEVAKMAYRSLMLNPSLKRIKSALQDKHYFRKHGADAYYGQ
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]