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The map label for this gene is ysgA [H]

Identifier: 52786747

GI number: 52786747

Start: 2902095

End: 2902841

Strand: Reverse

Name: ysgA [H]

Synonym: BLi03017

Alternate gene names: 52786747

Gene position: 2902841-2902095 (Counterclockwise)

Preceding gene: 52786749

Following gene: 52786746

Centisome position: 68.74

GC content: 52.74

Gene sequence:

>747_bases
TTGAAACGAATTGAATCAGCCAAAAATCAAAAAGTGAAGGACTGGAAAAAACTTCATGCAAAAAAAGAGCGGACAAAAAC
GAATACTTTCTTAATAGAAGGCGAGCATCTCGTTGAGGAAGCGCTGAAGACACCGGGTGTTGTGAAAGAAATCATGGTCG
CAGACGAAGCGGACTTCCCGGCTATGATTGATGAGTCTGTTGCCCGCTATGTTTTGAGCGCCGATGCTTTTTCAGCGATT
GCCGAAACGGAGACGCCTCAGGCGGTCGCCGCTGTATGCCGAATGCCCGAAAGCGGACCTTTTCAATACGAAAAGCTGCT
GCTAGCTGATGCTGTGCAGGACCCGGGCAATTTAGGGACGATCATCCGGACGGCAGACGCGGCGGGGATCGATGCCGTTG
TTATCGGACAAGGGACTGTCGACCCTTACAATGCCAAAACGCTCAGGTCGGCTCAAGGCTCGCATTTTCACATCCCGATT
TTAAAACGCGAGCTTTCAGAGCTGATTGAAGAGCTGAAGGGAAAAAGCGTCCCGGTTTACGGCACAGCGCTGCAGGGTGC
CGTGCCATTTAGAGAAGCGGAGCCGTCGCAGTCGTTTGCGCTATTGATCGGAAACGAAGGATCTGGGGTCGATCCGGCCC
TCCTCGCACAGACCGACCAAAATCTGTACGTTCCGATCTACGGAAAAGCGGAGTCGCTCAATGTGGCGGCCGCAGCCGCG
GTCCTTCTTTATCATCTCCGCGGATAA

Upstream 100 bases:

>100_bases
CATCATCTGTTTTTCTATATTCTGCCTCGCTTTCGGGTTTATTATGTATCATTGATGAGATATAATGTGACTATTGCGAG
ACAAAAGGAGTCAAAACGAT

Downstream 100 bases:

>100_bases
CCGGTTGCACAGGATCATGTAATTCACTATAATGAATTTAATATGTTTAAAAACAGTGATAGAGGCTCCGTTTTTTCACA
TGCCGCCATTCAGGGAGAAA

Product: YsgA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MKRIESAKNQKVKDWKKLHAKKERTKTNTFLIEGEHLVEEALKTPGVVKEIMVADEADFPAMIDESVARYVLSADAFSAI
AETETPQAVAAVCRMPESGPFQYEKLLLADAVQDPGNLGTIIRTADAAGIDAVVIGQGTVDPYNAKTLRSAQGSHFHIPI
LKRELSELIEELKGKSVPVYGTALQGAVPFREAEPSQSFALLIGNEGSGVDPALLAQTDQNLYVPIYGKAESLNVAAAAA
VLLYHLRG

Sequences:

>Translated_248_residues
MKRIESAKNQKVKDWKKLHAKKERTKTNTFLIEGEHLVEEALKTPGVVKEIMVADEADFPAMIDESVARYVLSADAFSAI
AETETPQAVAAVCRMPESGPFQYEKLLLADAVQDPGNLGTIIRTADAAGIDAVVIGQGTVDPYNAKTLRSAQGSHFHIPI
LKRELSELIEELKGKSVPVYGTALQGAVPFREAEPSQSFALLIGNEGSGVDPALLAQTDQNLYVPIYGKAESLNVAAAAA
VLLYHLRG
>Mature_248_residues
MKRIESAKNQKVKDWKKLHAKKERTKTNTFLIEGEHLVEEALKTPGVVKEIMVADEADFPAMIDESVARYVLSADAFSAI
AETETPQAVAAVCRMPESGPFQYEKLLLADAVQDPGNLGTIIRTADAAGIDAVVIGQGTVDPYNAKTLRSAQGSHFHIPI
LKRELSELIEELKGKSVPVYGTALQGAVPFREAEPSQSFALLIGNEGSGVDPALLAQTDQNLYVPIYGKAESLNVAAAAA
VLLYHLRG

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=169, Percent_Identity=30.1775147928994, Blast_Score=80, Evalue=1e-15,
Organism=Escherichia coli, GI1790623, Length=164, Percent_Identity=28.6585365853659, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790083, Length=164, Percent_Identity=31.7073170731707, Blast_Score=75, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24666840, Length=284, Percent_Identity=23.943661971831, Blast_Score=83, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 26725; Mature: 26725

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRIESAKNQKVKDWKKLHAKKERTKTNTFLIEGEHLVEEALKTPGVVKEIMVADEADFP
CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCHHHHHHHHCCCCCC
AMIDESVARYVLSADAFSAIAETETPQAVAAVCRMPESGPFQYEKLLLADAVQDPGNLGT
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
IIRTADAAGIDAVVIGQGTVDPYNAKTLRSAQGSHFHIPILKRELSELIEELKGKSVPVY
EEEECCCCCCCEEEEECCCCCCCCCHHHHCCCCCEEECHHHHHHHHHHHHHHCCCCCCEE
GTALQGAVPFREAEPSQSFALLIGNEGSGVDPALLAQTDQNLYVPIYGKAESLNVAAAAA
ECHHCCCCCCCCCCCCCCEEEEECCCCCCCCHHHEEECCCCEEEEEECCCCCCHHHHHHH
VLLYHLRG
HHHHHHCC
>Mature Secondary Structure
MKRIESAKNQKVKDWKKLHAKKERTKTNTFLIEGEHLVEEALKTPGVVKEIMVADEADFP
CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCHHHHHHHHCCCCCC
AMIDESVARYVLSADAFSAIAETETPQAVAAVCRMPESGPFQYEKLLLADAVQDPGNLGT
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
IIRTADAAGIDAVVIGQGTVDPYNAKTLRSAQGSHFHIPILKRELSELIEELKGKSVPVY
EEEECCCCCCCEEEEECCCCCCCCCHHHHCCCCCEEECHHHHHHHHHHHHHHCCCCCCEE
GTALQGAVPFREAEPSQSFALLIGNEGSGVDPALLAQTDQNLYVPIYGKAESLNVAAAAA
ECHHCCCCCCCCCCCCCCEEEEECCCCCCCCHHHEEECCCCEEEEEECCCCCCHHHHHHH
VLLYHLRG
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]