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The map label for this gene is ytbD [H]

Identifier: 52786573

GI number: 52786573

Start: 2724579

End: 2725883

Strand: Reverse

Name: ytbD [H]

Synonym: BLi02839

Alternate gene names: 52786573

Gene position: 2725883-2724579 (Counterclockwise)

Preceding gene: 52786576

Following gene: 52786572

Centisome position: 64.55

GC content: 50.19

Gene sequence:

>1305_bases
ATGATATGTACCATAATATCATTAGCCGGCAGCCATTTGCTATACCTTAAAAAAGAAAGGAGAAAAAGAATGACCTCTGT
TCATGATAAAAAACGCAGTATATTAGCGCTTTTAGCCTTGGCGGCCAGCGCATTTGCCATCGGCACGACCGAATTCATCA
GCGTGGGGCTTCTGCCTTTAATTGCTGAAGACATGAATATTTCGGTGACGACGGCAGGACTGACCGTATCATTATACGCA
CTGGGCGTAACAGTCGGCGCACCTGTTCTGACGTCTGTCACATCCAGTATGCCGAGAAAAGCGCTGCTGCTGGTGATTAT
GCTCATTTTTATGATCGGCAACGGGCTTGCGGCATGTGCCGGAAGCATCGGTGTTTTATTAACCGCCCGCGTGATTTCGG
CGTTTTCTCATGGCGTATTTATGTCAATCGGTTCAACGATTGCGGCAAGCCTAGTCCCGGCGGATAAAAGAGCCGGAGCG
ATATCGATCATGTTTACCGGGCTGACGATTGCAATGATTACCGGAGTTCCCATCGGCACGTTCCTCGGTCAGCAGTTCGG
CTGGCGGATTGCTTTTGCGGCGATCGTCGCTGTCGGCGCACTGGCGTTTATCGCCAACAGCTTACTTGTTCCGGGCGATT
TGCCGAAAGGCGTCCGAACGTCTTTCAAGAGCCAGTTGAAGCTTGTGACCAATGGGCGGCTGCTGCTTTTATTCATCATT
ACGGCGCTTGGTTATGGAGGGACATTTGTTGTCTTTACGTATTTATCCCCGCTGCTTCAGCATGTGACGGGCTTTAAACA
GGAAGCTGTTGCCGTCATTTTGCTTGCTTACGGCATTGCCGTCGCGCTCGGAAATATTATCGGAGGTAAAGCGGCCAACA
AAAAACCGCTTACTGCATTATTCTATATGTTCATCGCCCAGGCGGCTGTGCTTCTCATCTTAACGGCGGCTGCTCCTTAT
CAGGCAGCGGGCTTTATCGTCATCATGCTGATGGGATTTTTAGCCTTCATGAATGTCCCCGGGCTCCAGTCCTATGTGGT
GATTCTGGCTGAACGGTTTGTTCCAGGGGCGGTTGATGTCGCATCAGCTGTCAATATTGCGGCGTTCAACGTCGGTATAG
CGATCGGTTCTTATACAGGAGGCGCCATCACACAATCGATCGGATTGATTCACACTCCATGGGTGGGAGCTTTGATGGTG
CTCGGCGCCGTCGTGCTGACAGGCTGGAGCAGGGCGCTGGAACGAAATGATCAAAAACAAAATGATCAAAAACAAAATCA
AGCTTTAAAGGAAAACTGCGCATGA

Upstream 100 bases:

>100_bases
TTTTCGGCTTCATGTTCTCCTCCAATCCATAGGTACCGAAAAGTACCTATCTCACTTTTTGGTTCCTATCACACTTAAAA
GTGCGTACTTTTTTTCGCAG

Downstream 100 bases:

>100_bases
CGCATACAAAATATAAGGAGGCCAATTAAATGATGACAGCAAAAAATTTGCAAGATCGAATCAAATTGAATAACGGGACA
GCTATGCCTTGGTTTGGACT

Product: YtbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MICTIISLAGSHLLYLKKERRKRMTSVHDKKRSILALLALAASAFAIGTTEFISVGLLPLIAEDMNISVTTAGLTVSLYA
LGVTVGAPVLTSVTSSMPRKALLLVIMLIFMIGNGLAACAGSIGVLLTARVISAFSHGVFMSIGSTIAASLVPADKRAGA
ISIMFTGLTIAMITGVPIGTFLGQQFGWRIAFAAIVAVGALAFIANSLLVPGDLPKGVRTSFKSQLKLVTNGRLLLLFII
TALGYGGTFVVFTYLSPLLQHVTGFKQEAVAVILLAYGIAVALGNIIGGKAANKKPLTALFYMFIAQAAVLLILTAAAPY
QAAGFIVIMLMGFLAFMNVPGLQSYVVILAERFVPGAVDVASAVNIAAFNVGIAIGSYTGGAITQSIGLIHTPWVGALMV
LGAVVLTGWSRALERNDQKQNDQKQNQALKENCA

Sequences:

>Translated_434_residues
MICTIISLAGSHLLYLKKERRKRMTSVHDKKRSILALLALAASAFAIGTTEFISVGLLPLIAEDMNISVTTAGLTVSLYA
LGVTVGAPVLTSVTSSMPRKALLLVIMLIFMIGNGLAACAGSIGVLLTARVISAFSHGVFMSIGSTIAASLVPADKRAGA
ISIMFTGLTIAMITGVPIGTFLGQQFGWRIAFAAIVAVGALAFIANSLLVPGDLPKGVRTSFKSQLKLVTNGRLLLLFII
TALGYGGTFVVFTYLSPLLQHVTGFKQEAVAVILLAYGIAVALGNIIGGKAANKKPLTALFYMFIAQAAVLLILTAAAPY
QAAGFIVIMLMGFLAFMNVPGLQSYVVILAERFVPGAVDVASAVNIAAFNVGIAIGSYTGGAITQSIGLIHTPWVGALMV
LGAVVLTGWSRALERNDQKQNDQKQNQALKENCA
>Mature_434_residues
MICTIISLAGSHLLYLKKERRKRMTSVHDKKRSILALLALAASAFAIGTTEFISVGLLPLIAEDMNISVTTAGLTVSLYA
LGVTVGAPVLTSVTSSMPRKALLLVIMLIFMIGNGLAACAGSIGVLLTARVISAFSHGVFMSIGSTIAASLVPADKRAGA
ISIMFTGLTIAMITGVPIGTFLGQQFGWRIAFAAIVAVGALAFIANSLLVPGDLPKGVRTSFKSQLKLVTNGRLLLLFII
TALGYGGTFVVFTYLSPLLQHVTGFKQEAVAVILLAYGIAVALGNIIGGKAANKKPLTALFYMFIAQAAVLLILTAAAPY
QAAGFIVIMLMGFLAFMNVPGLQSYVVILAERFVPGAVDVASAVNIAAFNVGIAIGSYTGGAITQSIGLIHTPWVGALMV
LGAVVLTGWSRALERNDQKQNDQKQNQALKENCA

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=336, Percent_Identity=38.0952380952381, Blast_Score=198, Evalue=5e-52,
Organism=Escherichia coli, GI1786595, Length=348, Percent_Identity=30.4597701149425, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1787808, Length=400, Percent_Identity=30.5, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI145693198, Length=365, Percent_Identity=26.3013698630137, Blast_Score=98, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 45331; Mature: 45331

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS00589 PTS_HPR_SER ; PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MICTIISLAGSHLLYLKKERRKRMTSVHDKKRSILALLALAASAFAIGTTEFISVGLLPL
CEEEEEEHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
IAEDMNISVTTAGLTVSLYALGVTVGAPVLTSVTSSMPRKALLLVIMLIFMIGNGLAACA
HHCCCCEEEEECCHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHH
GSIGVLLTARVISAFSHGVFMSIGSTIAASLVPADKRAGAISIMFTGLTIAMITGVPIGT
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHCCCHHH
FLGQQFGWRIAFAAIVAVGALAFIANSLLVPGDLPKGVRTSFKSQLKLVTNGRLLLLFII
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH
TALGYGGTFVVFTYLSPLLQHVTGFKQEAVAVILLAYGIAVALGNIIGGKAANKKPLTAL
HHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
FYMFIAQAAVLLILTAAAPYQAAGFIVIMLMGFLAFMNVPGLQSYVVILAERFVPGAVDV
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHH
ASAVNIAAFNVGIAIGSYTGGAITQSIGLIHTPWVGALMVLGAVVLTGWSRALERNDQKQ
HHHHHHHHEEEEEEEECCCCCHHHHHCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCHH
NDQKQNQALKENCA
HHHHHHHHHHHCCC
>Mature Secondary Structure
MICTIISLAGSHLLYLKKERRKRMTSVHDKKRSILALLALAASAFAIGTTEFISVGLLPL
CEEEEEEHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
IAEDMNISVTTAGLTVSLYALGVTVGAPVLTSVTSSMPRKALLLVIMLIFMIGNGLAACA
HHCCCCEEEEECCHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHH
GSIGVLLTARVISAFSHGVFMSIGSTIAASLVPADKRAGAISIMFTGLTIAMITGVPIGT
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHCCCHHH
FLGQQFGWRIAFAAIVAVGALAFIANSLLVPGDLPKGVRTSFKSQLKLVTNGRLLLLFII
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH
TALGYGGTFVVFTYLSPLLQHVTGFKQEAVAVILLAYGIAVALGNIIGGKAANKKPLTAL
HHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
FYMFIAQAAVLLILTAAAPYQAAGFIVIMLMGFLAFMNVPGLQSYVVILAERFVPGAVDV
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHH
ASAVNIAAFNVGIAIGSYTGGAITQSIGLIHTPWVGALMVLGAVVLTGWSRALERNDQKQ
HHHHHHHHEEEEEEEECCCCCHHHHHCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCHH
NDQKQNQALKENCA
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]