Click here to switch to the map view.

The map label for this gene is spoVAF [H]

Identifier: 52786399

GI number: 52786399

Start: 2568395

End: 2569849

Strand: Reverse

Name: spoVAF [H]

Synonym: BLi02663

Alternate gene names: 52786399

Gene position: 2569849-2568395 (Counterclockwise)

Preceding gene: 52786400

Following gene: 52786398

Centisome position: 60.86

GC content: 49.28

Gene sequence:

>1455_bases
ATGAAAAAAAAGCATGCGGTCCAAAAAAATTTAGCGAAAAATGTTGAATATTTAAATGAAAAGCTTGGTGTCGACAAAAG
CTTCGACATGATCCGGCTTGATGTCGTTTATGCTGATAGAGACATGTCGCTTTATCTTGTCGACGGCTTTGTAAAAGATG
ATATTATGCATCATTTGCTTAAAAATCTCTCAAGGCTCACACCTGAAAATCTGGAAGACGATCCGCTTGAAAAGCTGATC
AAAACGCATATCCCATACATCGAAATTGATACGGAAGATGACCTCGACAAAGCAGCCGACCAGGTGCTGTCCGGGCCGGC
TGTCCTCCTTGCTGACGGAGTTGACCATGCGATTATTATCGATGCGCGGACGTATCCGGCAAGAAATCCGGAGGAACCCG
ACAATGAACGCGTTGTCAGGGGTTCAAGAGACGGCTTCGTCGAAACGATCGTGTTTAACACCGCACTGACGAGACGAAGA
ATCCGCGACCGTTCCCTCAGAATGGAGTTCCTGCAGGTCGGCAGAAGAAGCAAAACGGATGTCGTCATCTGTTATTTGGA
AGATATCGCCGACTTGGAAAGTGTAAAAAAGCTGAAACAATCGCTTGAAGCGATCGACACGGATGCTTTGACAATGGCGG
AAAAGACGCTGGAAGAATACATCGGCGGCCGTCATTGGAACCCTTATCCGACGGTCCGCTATACAGAAAGACCTGATACT
GCGGCCGTTCATTTGTACGAAGGGCACATTCTCGTCTTTGTGGACGGCTCGCCAAGCGCGCTGATTACCCCTGTTACTTT
TTGGCACCATCTGCAGCATGCCGAAGAGTACAGAAACAAACCTCTTGCGGGTGCTTATTTGCGAATAGTCCGTTTTATAT
CTGTCTTGGCATCGATCTTTTTGCTGCCGCTGTGGTTTCTGCTTTCCGTCCATCCCGATCTTTTGCCGGACGCCCTTGAA
TATATAGGGCCTGAAAAAAAAGGAGCCCTTCCGCTGCTTGCGCAATTCATCATTATTGAAATCGGCGTCGACATGATGCG
GATGGCTGCAATCCACACCCCGTCGTCTCTTGCTACGGCTCTCGGACTCGTAGCTGCTTTAATGATCGGCGAAGTGGCGG
TGCAGGTCGGGCTTTTCTCGCATGAAGTCGTCTTGTATCTCGCTGTCGCAGCCATCGGCACGTTTGCTACGCCGAGCTAT
GAGCTGAGCATAGCGAACAGGCTTGCAAGAATCGTTCTCCTGATCGCCGCAGGTGCATTCGGACCGATCGGCTTTGTCAT
TGCGATATTCTGCTGGGTGATTTATCTCGTCAGAATGAAGTCGTTTCATGTGCCGTATTTATGGCCGTTTATTCCTTTTG
ACTACAGAGCCTTCCGCGATATCGCAATTCGCACGCCGATGCCGCTGAAAAACAGAAGACCCGTATTTTTGGATCCCCAG
GATCCCGACCGCTGA

Upstream 100 bases:

>100_bases
ATAAAGAAAGAAAGCGCCCGGTAATCAAGTATGAAAAGCTTCCGTTATGTTAAAAATGGTCTTTAGAACAGACTCATTTG
ACGGGAGCTTTTAATATACA

Downstream 100 bases:

>100_bases
ATGTCTGTTTTCCGGCAGGAAAACAGGCTTTTTTTTTGCTTGACGCCGGACAGCTTTATGAATACTCTAATGTTAGACCT
TTAAAGAATGGTGAAATCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 484; Mature: 484

Protein sequence:

>484_residues
MKKKHAVQKNLAKNVEYLNEKLGVDKSFDMIRLDVVYADRDMSLYLVDGFVKDDIMHHLLKNLSRLTPENLEDDPLEKLI
KTHIPYIEIDTEDDLDKAADQVLSGPAVLLADGVDHAIIIDARTYPARNPEEPDNERVVRGSRDGFVETIVFNTALTRRR
IRDRSLRMEFLQVGRRSKTDVVICYLEDIADLESVKKLKQSLEAIDTDALTMAEKTLEEYIGGRHWNPYPTVRYTERPDT
AAVHLYEGHILVFVDGSPSALITPVTFWHHLQHAEEYRNKPLAGAYLRIVRFISVLASIFLLPLWFLLSVHPDLLPDALE
YIGPEKKGALPLLAQFIIIEIGVDMMRMAAIHTPSSLATALGLVAALMIGEVAVQVGLFSHEVVLYLAVAAIGTFATPSY
ELSIANRLARIVLLIAAGAFGPIGFVIAIFCWVIYLVRMKSFHVPYLWPFIPFDYRAFRDIAIRTPMPLKNRRPVFLDPQ
DPDR

Sequences:

>Translated_484_residues
MKKKHAVQKNLAKNVEYLNEKLGVDKSFDMIRLDVVYADRDMSLYLVDGFVKDDIMHHLLKNLSRLTPENLEDDPLEKLI
KTHIPYIEIDTEDDLDKAADQVLSGPAVLLADGVDHAIIIDARTYPARNPEEPDNERVVRGSRDGFVETIVFNTALTRRR
IRDRSLRMEFLQVGRRSKTDVVICYLEDIADLESVKKLKQSLEAIDTDALTMAEKTLEEYIGGRHWNPYPTVRYTERPDT
AAVHLYEGHILVFVDGSPSALITPVTFWHHLQHAEEYRNKPLAGAYLRIVRFISVLASIFLLPLWFLLSVHPDLLPDALE
YIGPEKKGALPLLAQFIIIEIGVDMMRMAAIHTPSSLATALGLVAALMIGEVAVQVGLFSHEVVLYLAVAAIGTFATPSY
ELSIANRLARIVLLIAAGAFGPIGFVIAIFCWVIYLVRMKSFHVPYLWPFIPFDYRAFRDIAIRTPMPLKNRRPVFLDPQ
DPDR
>Mature_484_residues
MKKKHAVQKNLAKNVEYLNEKLGVDKSFDMIRLDVVYADRDMSLYLVDGFVKDDIMHHLLKNLSRLTPENLEDDPLEKLI
KTHIPYIEIDTEDDLDKAADQVLSGPAVLLADGVDHAIIIDARTYPARNPEEPDNERVVRGSRDGFVETIVFNTALTRRR
IRDRSLRMEFLQVGRRSKTDVVICYLEDIADLESVKKLKQSLEAIDTDALTMAEKTLEEYIGGRHWNPYPTVRYTERPDT
AAVHLYEGHILVFVDGSPSALITPVTFWHHLQHAEEYRNKPLAGAYLRIVRFISVLASIFLLPLWFLLSVHPDLLPDALE
YIGPEKKGALPLLAQFIIIEIGVDMMRMAAIHTPSSLATALGLVAALMIGEVAVQVGLFSHEVVLYLAVAAIGTFATPSY
ELSIANRLARIVLLIAAGAFGPIGFVIAIFCWVIYLVRMKSFHVPYLWPFIPFDYRAFRDIAIRTPMPLKNRRPVFLDPQ
DPDR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 54791; Mature: 54791

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKHAVQKNLAKNVEYLNEKLGVDKSFDMIRLDVVYADRDMSLYLVDGFVKDDIMHHLL
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCEEEEECCHHHHHHHHHHH
KNLSRLTPENLEDDPLEKLIKTHIPYIEIDTEDDLDKAADQVLSGPAVLLADGVDHAIII
HHHHHCCCCCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCEEEEECCCCCEEEE
DARTYPARNPEEPDNERVVRGSRDGFVETIVFNTALTRRRIRDRSLRMEFLQVGRRSKTD
ECCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
VVICYLEDIADLESVKKLKQSLEAIDTDALTMAEKTLEEYIGGRHWNPYPTVRYTERPDT
EEEEEHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCC
AAVHLYEGHILVFVDGSPSALITPVTFWHHLQHAEEYRNKPLAGAYLRIVRFISVLASIF
EEEEEEECEEEEEECCCCCCEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
LLPLWFLLSVHPDLLPDALEYIGPEKKGALPLLAQFIIIEIGVDMMRMAAIHTPSSLATA
HHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LGLVAALMIGEVAVQVGLFSHEVVLYLAVAAIGTFATPSYELSIANRLARIVLLIAAGAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
GPIGFVIAIFCWVIYLVRMKSFHVPYLWPFIPFDYRAFRDIAIRTPMPLKNRRPVFLDPQ
CHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHCCCCCCCCCCCCEEECCC
DPDR
CCCC
>Mature Secondary Structure
MKKKHAVQKNLAKNVEYLNEKLGVDKSFDMIRLDVVYADRDMSLYLVDGFVKDDIMHHLL
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCEEEEECCHHHHHHHHHHH
KNLSRLTPENLEDDPLEKLIKTHIPYIEIDTEDDLDKAADQVLSGPAVLLADGVDHAIII
HHHHHCCCCCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCEEEEECCCCCEEEE
DARTYPARNPEEPDNERVVRGSRDGFVETIVFNTALTRRRIRDRSLRMEFLQVGRRSKTD
ECCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
VVICYLEDIADLESVKKLKQSLEAIDTDALTMAEKTLEEYIGGRHWNPYPTVRYTERPDT
EEEEEHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCC
AAVHLYEGHILVFVDGSPSALITPVTFWHHLQHAEEYRNKPLAGAYLRIVRFISVLASIF
EEEEEEECEEEEEECCCCCCEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
LLPLWFLLSVHPDLLPDALEYIGPEKKGALPLLAQFIIIEIGVDMMRMAAIHTPSSLATA
HHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LGLVAALMIGEVAVQVGLFSHEVVLYLAVAAIGTFATPSYELSIANRLARIVLLIAAGAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
GPIGFVIAIFCWVIYLVRMKSFHVPYLWPFIPFDYRAFRDIAIRTPMPLKNRRPVFLDPQ
CHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHCCCCCCCCCCCCEEECCC
DPDR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 7934829; 1368705; 3926949 [H]