Click here to switch to the map view.

The map label for this gene is sigX [H]

Identifier: 52786190

GI number: 52786190

Start: 2386074

End: 2386658

Strand: Reverse

Name: sigX [H]

Synonym: BLi02449

Alternate gene names: 52786190

Gene position: 2386658-2386074 (Counterclockwise)

Preceding gene: 52786191

Following gene: 52786189

Centisome position: 56.52

GC content: 43.25

Gene sequence:

>585_bases
GTGGAAGAAACCTTTCAGAAAATATATGATCAGTATCATCAGGATTTATTTCAGTTTTTATTTTATATGGTAAAAGACAA
AAATCAGGCGGAAGACTTAGTTCAGGAAGTATACATCCGCGTCCTGCATTCTTACGAAACATTTGAAGGCAGGAGCAGCG
AAAAAACCTGGCTTCTTTCGATTGCGCGGCACGTTGCGATCGACTGGTTCAGAAAGCAGCAGACGATCCGCCAGCGGATT
TTGGGGACGTTTGACTGGGAGAAACAAGATGTAAAAGACCGCAAGCCTCTGCCTGAGGACATCGTGATGCAAAATGAAAA
CCTAAAGGAAATTTTCGAGGCCCTAGACAAGTGTACGCTTGACCAAAGATCAGTTATCGTCTTGCGTTTTATTCAAGGAT
ATTCGATCAGTGAAACAGCAAAAGCCTTGAATTTTTCCGAAAGCAAGGTAAAAACCACTCAGCACCGCGGTCTGAAAGTG
CTTCGTAAACAGATGGAGCTTTTGAAGGAGGATCCAAAGAATGAAGAAGTCAGAATGGAACGAAGAACGGCTGAAGGCGT
TACTAAGCCAACTTCCAACGGTTAA

Upstream 100 bases:

>100_bases
CCCCCTTTCCATTTTCATATGTTCGTAATATAGTTGTAATAGTTGTAATGTAACCTTTTAAGATTGACAAACGACAATAA
ATTGAACGGAGGGGTTTCAG

Downstream 100 bases:

>100_bases
GGATAATCGTTCGGCAAATCAGATCTATCAAAAGCTGATTCTCGCACCAAAGCGTAAATCACCGAAAAAACGGGTCGGCG
CATTTGCTGCTACAGTTTTG

Product: RNA polymerase sigma factor SigX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MEETFQKIYDQYHQDLFQFLFYMVKDKNQAEDLVQEVYIRVLHSYETFEGRSSEKTWLLSIARHVAIDWFRKQQTIRQRI
LGTFDWEKQDVKDRKPLPEDIVMQNENLKEIFEALDKCTLDQRSVIVLRFIQGYSISETAKALNFSESKVKTTQHRGLKV
LRKQMELLKEDPKNEEVRMERRTAEGVTKPTSNG

Sequences:

>Translated_194_residues
MEETFQKIYDQYHQDLFQFLFYMVKDKNQAEDLVQEVYIRVLHSYETFEGRSSEKTWLLSIARHVAIDWFRKQQTIRQRI
LGTFDWEKQDVKDRKPLPEDIVMQNENLKEIFEALDKCTLDQRSVIVLRFIQGYSISETAKALNFSESKVKTTQHRGLKV
LRKQMELLKEDPKNEEVRMERRTAEGVTKPTSNG
>Mature_194_residues
MEETFQKIYDQYHQDLFQFLFYMVKDKNQAEDLVQEVYIRVLHSYETFEGRSSEKTWLLSIARHVAIDWFRKQQTIRQRI
LGTFDWEKQDVKDRKPLPEDIVMQNENLKEIFEALDKCTLDQRSVIVLRFIQGYSISETAKALNFSESKVKTTQHRGLKV
LRKQMELLKEDPKNEEVRMERRTAEGVTKPTSNG

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. May be involved in the regulation of iron metabolism [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23169; Mature: 23169

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEETFQKIYDQYHQDLFQFLFYMVKDKNQAEDLVQEVYIRVLHSYETFEGRSSEKTWLLS
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
IARHVAIDWFRKQQTIRQRILGTFDWEKQDVKDRKPLPEDIVMQNENLKEIFEALDKCTL
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHCCC
DQRSVIVLRFIQGYSISETAKALNFSESKVKTTQHRGLKVLRKQMELLKEDPKNEEVRME
CCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
RRTAEGVTKPTSNG
HHHHHCCCCCCCCC
>Mature Secondary Structure
MEETFQKIYDQYHQDLFQFLFYMVKDKNQAEDLVQEVYIRVLHSYETFEGRSSEKTWLLS
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
IARHVAIDWFRKQQTIRQRILGTFDWEKQDVKDRKPLPEDIVMQNENLKEIFEALDKCTL
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHCCC
DQRSVIVLRFIQGYSISETAKALNFSESKVKTTQHRGLKVLRKQMELLKEDPKNEEVRME
CCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
RRTAEGVTKPTSNG
HHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7934829; 9384377; 8052622; 9393439 [H]