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The map label for this gene is ypbD [H]

Identifier: 52786182

GI number: 52786182

Start: 2377484

End: 2378128

Strand: Reverse

Name: ypbD [H]

Synonym: BLi02440

Alternate gene names: 52786182

Gene position: 2378128-2377484 (Counterclockwise)

Preceding gene: 52786183

Following gene: 52786181

Centisome position: 56.32

GC content: 45.58

Gene sequence:

>645_bases
ATGCTGAAAAAACAGTCGGAAATCATACGTCGCCTGTCAGACGGGGAAATGCTGAAACAGCTCTATTTTTCCCAGACGCT
GATGCTTTTTACCGCATTATTGATGGGCATCTTTTTATTTGATGATGCAGACGCTTTTCTATCGCTTTGGAATCCATCGG
ACTTGAGCATCCTGAAGTACGGGGCGCCGCTCGCGGCTCTCGTGATCATCGCCGACCTGATGGTGATGAAATGGGCTCCC
AAGCATATGTATGACGATGAAGGGATAAATGAAAAGCTCTTTCGTGAACGCTCGTATCCGCATATCGTGATTCTTACCCT
TTTCATTGCATTTGCAGAGGAAATATTGTTCAGGGGCGTTATCCAGACGCATTTCGGTCTCTGGGCGGCGAGCATTATTT
TCGCGATATTGCATTTTCGTTATTTAAAAAAATGGCTGCTGTTTGTAATGGTGGTGTCCATCAGCTTTTTGCTCGGATTG
AGCTTTGAACGGACAGGGAATTTATTTGTTCCTGTCACGGCACATTTTTTGATCGATGTTGTATTTGCGTGCCAGATTCG
TTTTCAACACGTAAGGAGGAGTTCACATGACGGAGATGTCAAGAATAGAGAGGAAGAAGAGGGAACAGGAGAAGGCCAGC
GCTGA

Upstream 100 bases:

>100_bases
TTGAAGCATACGAAGTCAAAGGAGACCGTCCGTCTATGAACAAATTGACAGCGTGGGAAGAAGAATTGGATACCATATTT
GCCGCCAGCTGTGATCGTGT

Downstream 100 bases:

>100_bases
AATGAACCGGGAGGCGGCCGCGGCTGTTGAACTGGAGACACTTGATGAGGAGATTCCTTCCAGACGGACTTATCATAAAA
AAAAGAAGTCCAGCAAAAAA

Product: YpbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MLKKQSEIIRRLSDGEMLKQLYFSQTLMLFTALLMGIFLFDDADAFLSLWNPSDLSILKYGAPLAALVIIADLMVMKWAP
KHMYDDEGINEKLFRERSYPHIVILTLFIAFAEEILFRGVIQTHFGLWAASIIFAILHFRYLKKWLLFVMVVSISFLLGL
SFERTGNLFVPVTAHFLIDVVFACQIRFQHVRRSSHDGDVKNREEEEGTGEGQR

Sequences:

>Translated_214_residues
MLKKQSEIIRRLSDGEMLKQLYFSQTLMLFTALLMGIFLFDDADAFLSLWNPSDLSILKYGAPLAALVIIADLMVMKWAP
KHMYDDEGINEKLFRERSYPHIVILTLFIAFAEEILFRGVIQTHFGLWAASIIFAILHFRYLKKWLLFVMVVSISFLLGL
SFERTGNLFVPVTAHFLIDVVFACQIRFQHVRRSSHDGDVKNREEEEGTGEGQR
>Mature_214_residues
MLKKQSEIIRRLSDGEMLKQLYFSQTLMLFTALLMGIFLFDDADAFLSLWNPSDLSILKYGAPLAALVIIADLMVMKWAP
KHMYDDEGINEKLFRERSYPHIVILTLFIAFAEEILFRGVIQTHFGLWAASIIFAILHFRYLKKWLLFVMVVSISFLLGL
SFERTGNLFVPVTAHFLIDVVFACQIRFQHVRRSSHDGDVKNREEEEGTGEGQR

Specific function: Unknown

COG id: COG1266

COG function: function code R; Predicted metal-dependent membrane protease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003675 [H]

Pfam domain/function: PF02517 Abi [H]

EC number: NA

Molecular weight: Translated: 24738; Mature: 24738

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKQSEIIRRLSDGEMLKQLYFSQTLMLFTALLMGIFLFDDADAFLSLWNPSDLSILKY
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHH
GAPLAALVIIADLMVMKWAPKHMYDDEGINEKLFRERSYPHIVILTLFIAFAEEILFRGV
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
IQTHFGLWAASIIFAILHFRYLKKWLLFVMVVSISFLLGLSFERTGNLFVPVTAHFLIDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHH
VFACQIRFQHVRRSSHDGDVKNREEEEGTGEGQR
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLKKQSEIIRRLSDGEMLKQLYFSQTLMLFTALLMGIFLFDDADAFLSLWNPSDLSILKY
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHH
GAPLAALVIIADLMVMKWAPKHMYDDEGINEKLFRERSYPHIVILTLFIAFAEEILFRGV
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
IQTHFGLWAASIIFAILHFRYLKKWLLFVMVVSISFLLGLSFERTGNLFVPVTAHFLIDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHH
VFACQIRFQHVRRSSHDGDVKNREEEEGTGEGQR
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]