Click here to switch to the map view.

The map label for this gene is ypbE [H]

Identifier: 52786181

GI number: 52786181

Start: 2376763

End: 2377542

Strand: Reverse

Name: ypbE [H]

Synonym: BLi02439

Alternate gene names: 52786181

Gene position: 2377542-2376763 (Counterclockwise)

Preceding gene: 52786182

Following gene: 52786180

Centisome position: 56.3

GC content: 46.67

Gene sequence:

>780_bases
ATGACGGAGATGTCAAGAATAGAGAGGAAGAAGAGGGAACAGGAGAAGGCCAGCGCTGAAATGAACCGGGAGGCGGCCGC
GGCTGTTGAACTGGAGACACTTGATGAGGAGATTCCTTCCAGACGGACTTATCATAAAAAAAAGAAGTCCAGCAAAAAAA
AGAATAAAGACAGAAATCCACTATTCACGTCTCTTGCAGTCATGTTTGTTTTCATTCCGATCATCGTCTTCGTGGTGTTC
ATGTACATGCTGAATCAAGGAGGCGATACCGACCCTGATCAATATGATAATGTGTTTTATGAAAACAAAGGTGAAACGGG
AATGACGAATGAAAATCAAAACGGTGAACAAGAAGCGGATCAAAAGGCGGCTTCGCAGCATACAGCCGCCGCCCTTCAAG
AAGAAAAGCTGAAAGAGAGCAAACAGCCGGAAAATAAAGAGGATGAACCGTCCAAAAAAGACGAGCAAAAGCAAAAAGAG
CGGCCTAAAGAGGCAAAAAAAGCAGATGAGCAGCCTGTCGCTGCAAAGAAGCCCGCCGCATCGAAGCAGCCTGCGGAACA
AGAGAAGAAAACGGCAAACGCGCCTCAAACGCCGCCAGTTCAGCAAGCACCGCAGCCCAAAAAGGTGCTGAAGCACACGG
TTGGCGAAAAAGAGACGCTTTTCCGGATTTCGATGAAATATTATAAGAACCGGTCAGGAGAGGAAAAAATCCGCAACTAC
AATCAATTATCAGGCAACAATGTCTACGCCGGCCAGGTCCTGGATATCCCGATTTATTAA

Upstream 100 bases:

>100_bases
GAACGGACAGGGAATTTATTTGTTCCTGTCACGGCACATTTTTTGATCGATGTTGTATTTGCGTGCCAGATTCGTTTTCA
ACACGTAAGGAGGAGTTCAC

Downstream 100 bases:

>100_bases
CAGTGGCATGATTTTGCCCGCGAATACATATACATTGTACTAACAAATAGGACAAGGTGTGAGGACTGTGGGAAGCGAGC
TTGAAGAGCTGGACCGTTTT

Product: YpbE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MTEMSRIERKKREQEKASAEMNREAAAAVELETLDEEIPSRRTYHKKKKSSKKKNKDRNPLFTSLAVMFVFIPIIVFVVF
MYMLNQGGDTDPDQYDNVFYENKGETGMTNENQNGEQEADQKAASQHTAAALQEEKLKESKQPENKEDEPSKKDEQKQKE
RPKEAKKADEQPVAAKKPAASKQPAEQEKKTANAPQTPPVQQAPQPKKVLKHTVGEKETLFRISMKYYKNRSGEEKIRNY
NQLSGNNVYAGQVLDIPIY

Sequences:

>Translated_259_residues
MTEMSRIERKKREQEKASAEMNREAAAAVELETLDEEIPSRRTYHKKKKSSKKKNKDRNPLFTSLAVMFVFIPIIVFVVF
MYMLNQGGDTDPDQYDNVFYENKGETGMTNENQNGEQEADQKAASQHTAAALQEEKLKESKQPENKEDEPSKKDEQKQKE
RPKEAKKADEQPVAAKKPAASKQPAEQEKKTANAPQTPPVQQAPQPKKVLKHTVGEKETLFRISMKYYKNRSGEEKIRNY
NQLSGNNVYAGQVLDIPIY
>Mature_258_residues
TEMSRIERKKREQEKASAEMNREAAAAVELETLDEEIPSRRTYHKKKKSSKKKNKDRNPLFTSLAVMFVFIPIIVFVVFM
YMLNQGGDTDPDQYDNVFYENKGETGMTNENQNGEQEADQKAASQHTAAALQEEKLKESKQPENKEDEPSKKDEQKQKER
PKEAKKADEQPVAAKKPAASKQPAEQEKKTANAPQTPPVQQAPQPKKVLKHTVGEKETLFRISMKYYKNRSGEEKIRNYN
QLSGNNVYAGQVLDIPIY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 29638; Mature: 29506

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEMSRIERKKREQEKASAEMNREAAAAVELETLDEEIPSRRTYHKKKKSSKKKNKDRNP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCH
LFTSLAVMFVFIPIIVFVVFMYMLNQGGDTDPDQYDNVFYENKGETGMTNENQNGEQEAD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCEECCCCCCCCCCCCCCCHHHHH
QKAASQHTAAALQEEKLKESKQPENKEDEPSKKDEQKQKERPKEAKKADEQPVAAKKPAA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHHCCCCCCCCCCCCC
SKQPAEQEKKTANAPQTPPVQQAPQPKKVLKHTVGEKETLFRISMKYYKNRSGEEKIRNY
CCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHH
NQLSGNNVYAGQVLDIPIY
HHCCCCCEEECCEECCCCC
>Mature Secondary Structure 
TEMSRIERKKREQEKASAEMNREAAAAVELETLDEEIPSRRTYHKKKKSSKKKNKDRNP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCH
LFTSLAVMFVFIPIIVFVVFMYMLNQGGDTDPDQYDNVFYENKGETGMTNENQNGEQEAD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCEECCCCCCCCCCCCCCCHHHHH
QKAASQHTAAALQEEKLKESKQPENKEDEPSKKDEQKQKERPKEAKKADEQPVAAKKPAA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHHCCCCCCCCCCCCC
SKQPAEQEKKTANAPQTPPVQQAPQPKKVLKHTVGEKETLFRISMKYYKNRSGEEKIRNY
CCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHH
NQLSGNNVYAGQVLDIPIY
HHCCCCCEEECCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]