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The map label for this gene is yhdY [H]

Identifier: 52784808

GI number: 52784808

Start: 1035506

End: 1036582

Strand: Direct

Name: yhdY [H]

Synonym: BLi01036

Alternate gene names: 52784808

Gene position: 1035506-1036582 (Clockwise)

Preceding gene: 52784807

Following gene: 52784809

Centisome position: 24.52

GC content: 45.03

Gene sequence:

>1077_bases
ATGTTCGAAAAGTATATGACAATGGATTTCGCTGCCGATATCGGGATCAGCATCGGTATCCTTCTTTTATTTTTCGCGTT
TAGAAAAATATTTACGAAGTACTTATTCAACCTGATACTGAAATTGACGAATAAGACGAAAACGGACTTTTTCAATCAGG
TGGTGCTGGCGTTTGAAAAGCCGGCCAGGTGGTTTTTTGCGATACTCGGTATTTATCTGGCGATTATTTATTCCCCGTTT
TTTGAGGGGCATATGGGGATCGTTCATAAACTGTACAGAGTGTCCGTGATTTTGGTCATTGTAAGCGGCCTGTATAACTT
AACGGCGGCTTCGTCTGTTTTATTCGATAAAATCAATAAGCGGCTTGAGCTTGATATGGATGATATTCTTGCGCCGTTTT
TGTCCAAGATTCTCCGATTTATCATTGTAGCGCTTGGAATCAGCGTCATCGCCGGAGAGTTCAATTATGATGTCAACGGA
TTTGTTGCCGGACTCGGGCTCGGCGGATTCGCTTTTGCCCTTGCGGCAAAAGACACAGTCGGAAACTTTTTCGGCGGAGT
TGTCATTATTATGGAGAAGCCTTTTACAATCGGCGATTGGATTGAAACGAAAATTGTCACAGGAACTGTTGAAGATATAT
CGTTCAGAAGCACGAAAGTCCGCACGGCCGGAGAGGCTCTCGTTACCGTTCCCAACTCTGTGCTGGCCAACGAAGCGATC
ATGAACTGGACGAAAATGCGAAAGCGTCAGGTCACCTTTACGCTCGAAATCGATCCGTCAACCCCGCGGGAGAAAGTCGA
GCGGTGTGTGGAGCGTTTTAAAGAAATGCTCGAATCGCACGAAGGGGTCAACCCGGATGTCATTATGGTCAATTTCGATG
TCCTGAAGGATACGCATTTAAGCATCTTCTTCAACTACTATACAAATACGACGGTCTGGGCCGAAAACTTGGACGTCAGA
CAGGATGTGAACTACCGCATTCTTGACATTATGAAAGAGGAGCAGGTTGATTTTGTTTCTCCGGGGCACAGCCTCTTTGA
GTTGAAGAAAATGAAAGATCAGCAAGGAAATGCTTAG

Upstream 100 bases:

>100_bases
ATGCGTGGCATCGGTATTTTTGGCGTACAATAAAGTGAGAAATTTTTTGCTCGTTTTAGTATAATAAAAGCTTGATGAGT
GAAATAAGGGAGAGAAAGCA

Downstream 100 bases:

>100_bases
AAACAGTTTTTGAAGGGAGACAAGCCAAATGGAGGAAGAAGCCCTGAGATTTGCGGATATGATCGAAAATGCCGAGCGCA
TTACCGTTTTGACAGGCGCC

Product: YhdY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MFEKYMTMDFAADIGISIGILLLFFAFRKIFTKYLFNLILKLTNKTKTDFFNQVVLAFEKPARWFFAILGIYLAIIYSPF
FEGHMGIVHKLYRVSVILVIVSGLYNLTAASSVLFDKINKRLELDMDDILAPFLSKILRFIIVALGISVIAGEFNYDVNG
FVAGLGLGGFAFALAAKDTVGNFFGGVVIIMEKPFTIGDWIETKIVTGTVEDISFRSTKVRTAGEALVTVPNSVLANEAI
MNWTKMRKRQVTFTLEIDPSTPREKVERCVERFKEMLESHEGVNPDVIMVNFDVLKDTHLSIFFNYYTNTTVWAENLDVR
QDVNYRILDIMKEEQVDFVSPGHSLFELKKMKDQQGNA

Sequences:

>Translated_358_residues
MFEKYMTMDFAADIGISIGILLLFFAFRKIFTKYLFNLILKLTNKTKTDFFNQVVLAFEKPARWFFAILGIYLAIIYSPF
FEGHMGIVHKLYRVSVILVIVSGLYNLTAASSVLFDKINKRLELDMDDILAPFLSKILRFIIVALGISVIAGEFNYDVNG
FVAGLGLGGFAFALAAKDTVGNFFGGVVIIMEKPFTIGDWIETKIVTGTVEDISFRSTKVRTAGEALVTVPNSVLANEAI
MNWTKMRKRQVTFTLEIDPSTPREKVERCVERFKEMLESHEGVNPDVIMVNFDVLKDTHLSIFFNYYTNTTVWAENLDVR
QDVNYRILDIMKEEQVDFVSPGHSLFELKKMKDQQGNA
>Mature_358_residues
MFEKYMTMDFAADIGISIGILLLFFAFRKIFTKYLFNLILKLTNKTKTDFFNQVVLAFEKPARWFFAILGIYLAIIYSPF
FEGHMGIVHKLYRVSVILVIVSGLYNLTAASSVLFDKINKRLELDMDDILAPFLSKILRFIIVALGISVIAGEFNYDVNG
FVAGLGLGGFAFALAAKDTVGNFFGGVVIIMEKPFTIGDWIETKIVTGTVEDISFRSTKVRTAGEALVTVPNSVLANEAI
MNWTKMRKRQVTFTLEIDPSTPREKVERCVERFKEMLESHEGVNPDVIMVNFDVLKDTHLSIFFNYYTNTTVWAENLDVR
QDVNYRILDIMKEEQVDFVSPGHSLFELKKMKDQQGNA

Specific function: May play a role in resistance to osmotic downshock [H]

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1787591, Length=240, Percent_Identity=31.25, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1789291, Length=215, Percent_Identity=24.1860465116279, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786670, Length=113, Percent_Identity=30.0884955752212, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 40688; Mature: 40688

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEKYMTMDFAADIGISIGILLLFFAFRKIFTKYLFNLILKLTNKTKTDFFNQVVLAFEK
CCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
PARWFFAILGIYLAIIYSPFFEGHMGIVHKLYRVSVILVIVSGLYNLTAASSVLFDKINK
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLELDMDDILAPFLSKILRFIIVALGISVIAGEFNYDVNGFVAGLGLGGFAFALAAKDTV
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEECCCHHHHHHHHHHHHH
GNFFGGVVIIMEKPFTIGDWIETKIVTGTVEDISFRSTKVRTAGEALVTVPNSVLANEAI
HHHHCCEEEEEECCCCCCCCHHHEEEEECHHHCCCCCCEEECCCCEEEECCCHHHHHHHH
MNWTKMRKRQVTFTLEIDPSTPREKVERCVERFKEMLESHEGVNPDVIMVNFDVLKDTHL
HHHHHHHHEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHCCCEE
SIFFNYYTNTTVWAENLDVRQDVNYRILDIMKEEQVDFVSPGHSLFELKKMKDQQGNA
EEEEEEECCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MFEKYMTMDFAADIGISIGILLLFFAFRKIFTKYLFNLILKLTNKTKTDFFNQVVLAFEK
CCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
PARWFFAILGIYLAIIYSPFFEGHMGIVHKLYRVSVILVIVSGLYNLTAASSVLFDKINK
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLELDMDDILAPFLSKILRFIIVALGISVIAGEFNYDVNGFVAGLGLGGFAFALAAKDTV
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEECCCHHHHHHHHHHHHH
GNFFGGVVIIMEKPFTIGDWIETKIVTGTVEDISFRSTKVRTAGEALVTVPNSVLANEAI
HHHHCCEEEEEECCCCCCCCHHHEEEEECHHHCCCCCCEEECCCCEEEECCCHHHHHHHH
MNWTKMRKRQVTFTLEIDPSTPREKVERCVERFKEMLESHEGVNPDVIMVNFDVLKDTHL
HHHHHHHHEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHCCCEE
SIFFNYYTNTTVWAENLDVRQDVNYRILDIMKEEQVDFVSPGHSLFELKKMKDQQGNA
EEEEEEECCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]